Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g04564 ATGCTGACACACAACAACCGCCACCACATGGCTTCTTCATTCTTCAACCTCAATTTCACTATCACTAATCTCATTCTACTACTTTTATTATTACACCAACACTCCATAACAATTTTTGTTGTTGCATTAACAGAGAACAACAACAACAACAACAACAACAACAACAACAGCAACACAGAAACAAGTCCACCCCCAACTCCGATTCCCGAAGACGCAACCACCATTCCTCAACGCACCTTCACACCATTCAAACCAAGCGTAGCTATTGTCATTAGCGTTTTCACTGTCCTCTTTTCAGTTACTTTTCTTCTTCTTCTCTACATCAAACACATCAACAATACAACCAACGCGGAAACAATCAATATCGAAAGTAGTAGCTACGGCGGAAGCGGCGGCGGAATCTCGTCTTTCAGCGCCGGAAGAAAAAACTCCGGCGTTGACCGTTCAGTAGTCGAATCGTTACCGATTTTCAAATTCGGATCACTTACAGGCCAAAAAGAAGGTCTAGATTGCGCCGTTTGTCTCTCGAAATTCGAATCCTCAGAAGTTTTACGGTTATTGCCGAAATGTAAACACGCTTTTCACGTTGAATGTGTTGATACTTGGTTAGATGCACATTCAACTTGTCCTCTTTGTCGTTACAGAGTCGATCCTGAAGATATTCTTCTCGTAATGGAAAATTCATCATCATCATCATCATCATCAGTATCACGCGATTCACGCCAGATTCAGAATCAGAAAGAAGAAAATGATGAATGTGTTGTTGAAATTGAAAGAGGAACAATGACGAGAAACGAAATTGCAGAGTATTATCGAAAGAGGCATTCATCGGTAGGAGAAAAGGAATGGGAACGAGAACGAGAAAGAAGGAAAACGGCGTCGTTTAGATTCTCATTGGATAGTTCTAGAAAGAAGAACGATACTAGTTCTGTTGGAATTGGTGTTGGGCTTGGTTGTTTTGTTGGGCCAGGGCCCAGAAAAGATGGAATGTTGTTAACAAAAGAAGAGATCACAGAGAGGAGTAGCGTGGACAGGAGAAGAAGGTTAGAGCATAGGATTATTGTGTCACCTTCAGTAACAAATACTATAAGAAGTGGGCTCCACAAGAATCAACGGTGGAGTGATGTACAACCGTGTGATCTGTTGTATCTAACGTCAGAGATGATGATAATGAGTGAGTCACGGAGAGTGATGAAGAAGAATATGAACAAGAGAAATAGTAATGATAGTTGTTGGAATGGCAGAGGAGAAATTAATTCGAGAAGTGTGTCTGAAATCACGGGATTCAATAGGTTTCAAACCAAGCAATAA 1311 0.4096 MLTHNNRHHMASSFFNLNFTITNLILLLLLLHQHSITIFVVALTENNNNNNNNNNNSNTETSPPPTPIPEDATTIPQRTFTPFKPSVAIVISVFTVLFSVTFLLLLYIKHINNTTNAETINIESSSYGGSGGGISSFSAGRKNSGVDRSVVESLPIFKFGSLTGQKEGLDCAVCLSKFESSEVLRLLPKCKHAFHVECVDTWLDAHSTCPLCRYRVDPEDILLVMENSSSSSSSSVSRDSRQIQNQKEENDECVVEIERGTMTRNEIAEYYRKRHSSVGEKEWERERERRKTASFRFSLDSSRKKNDTSSVGIGVGLGCFVGPGPRKDGMLLTKEEITERSSVDRRRRLEHRIIVSPSVTNTIRSGLHKNQRWSDVQPCDLLYLTSEMMIMSESRRVMKKNMNKRNSNDSCWNGRGEINSRSVSEITGFNRFQTKQ 436
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g04564 436 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 145 220 IPR013083 -
Trre5g04564 436 MobiDBLite consensus disorder prediction 227 250 - -
Trre5g04564 436 Pfam Ring finger domain 170 213 IPR001841 -
Trre5g04564 436 MobiDBLite consensus disorder prediction 48 75 - -
Trre5g04564 436 FunFam RING-H2 finger protein ATL43 146 220 - -
Trre5g04564 436 SMART ring_2 171 212 IPR001841 -
Trre5g04564 436 ProSiteProfiles Zinc finger RING-type profile. 171 213 IPR001841 -
Trre5g04564 436 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 40 433 - -
Trre5g04564 436 SUPERFAMILY RING/U-box 152 218 - -
Trre5g04564 436 MobiDBLite consensus disorder prediction 227 241 - -
Trre5g04564 436 CDD RING-H2_EL5-like 170 213 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g04564 Trre-Chr5 47555226 47556536 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g04564 85 431 C3H Transcription Factor Family AT5G05810 46.518 2.02e-74 237
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g04564 K19041 - gmx:100794083 287.345