Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g04563 ATGGTGAAGTTTAACATGATAATACTATTTGTATTTGAGCTCCATATCCTATTACACCTTATCTTTGCAACATCTGAATCCAATATTGTGAAGTTCCTTCCTGGTTTTCAAGGGCCACTTCCTTTTCTACTAGAAACTGGATATATTGAAGTAAGTGAAAATGAATCAGATAAGAATGCTGAAGTTTTCTACTATTTTATAGAATCTGAGAACAATCCTATGGAAGATCCTCTCTTGCTTTGGCTTACTGGTGGCCCTGGTTGCTCTGCTTTCTCCGGCCTTGTCTTTGAAATAGGTCCAATAACATTTATAAATGATGAATACAATGGGAGCTTACCAAATTTGGCATTGAGGCCCCATTCATGGACAAAGGTTAGTAATATTATATTTTTGGATTTGCCTGTTGGTACTGGATTCTCATATCCCAAAACAGATGCTGCTGTTCAACAAAGCACTTGGAAACTAGTTCACAATGCTCATCAATTTCTTAGGAAGTGGCTGAATGATCATCCAAAATTTCTATCAAATGAAGTGTACATTGCTGGTGACTCATACTCGGGCCTTCCTGTCCCAATTATTGTTCAAGAGATTTCATATGGAAATGATGATAGCCTCCAACCCTGGATAAACATCCAGGGATACATACTGGGAAATCCCTTAACAACACCAAAATATGAAAATTACCATATACCATTTAGTCATGGTATGGCACTAATTTCTGATGAACTCTACCAGTCATTGGAAAAGAATTGTAGAGGGGAGTATAAACATATAGATTCCCAAAACGTATTTTGTTTGAAAGATTTTCAATCCTACACGGAGACTATTTCAAGAATATATAAGGCTTATATTTTGGAACCGAACTGCGAGTTTGATTCTGTTGGTGGAATTGAAGTTCCTTCGAGGACACCTCTTATTGATAAAGTTCATCACACCATTTTTAGTTCTTCTCTCACAATGTCACCTTTAAATTGTCGGACTGATGCATATTTCCTCAGTATTTATTGGGCTAACGATGATAATGTTCGCAAAGCACTGCACATTCGAAAGGGAAGTATAGGAGAATGGAACCGATGTAATTACGACATACCTTTTAAGCAAGAAATCCTTGACAGTTTCCCATATCATGCAAATCTTAGCAGAAAAGGCTTTCGATCATTAATATACAGTGGGGATCATGACATGCTAATTCCATTTTTGGCGACTCAAGCTTGGATAAGATCTTTAAATTACTCTATTGTAGATGATTGGAGGCAATGGTATTTTAATGACCAAGTAGCAGGATACACGAGGACTTACTCAAATCGGATGACATATGCAACTGTGAAGGGGGGAGGACATACTGCTCCAGAGTACAAACCTGAAGAATGCTTAGCCATGTTTAGTAGGTGGATATCTAATAAGACACTTTAG 1413 0.3737 MVKFNMIILFVFELHILLHLIFATSESNIVKFLPGFQGPLPFLLETGYIEVSENESDKNAEVFYYFIESENNPMEDPLLLWLTGGPGCSAFSGLVFEIGPITFINDEYNGSLPNLALRPHSWTKVSNIIFLDLPVGTGFSYPKTDAAVQQSTWKLVHNAHQFLRKWLNDHPKFLSNEVYIAGDSYSGLPVPIIVQEISYGNDDSLQPWINIQGYILGNPLTTPKYENYHIPFSHGMALISDELYQSLEKNCRGEYKHIDSQNVFCLKDFQSYTETISRIYKAYILEPNCEFDSVGGIEVPSRTPLIDKVHHTIFSSSLTMSPLNCRTDAYFLSIYWANDDNVRKALHIRKGSIGEWNRCNYDIPFKQEILDSFPYHANLSRKGFRSLIYSGDHDMLIPFLATQAWIRSLNYSIVDDWRQWYFNDQVAGYTRTYSNRMTYATVKGGGHTAPEYKPEECLAMFSRWISNKTL 470
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g04563 470 Gene3D alpha/beta hydrolase 40 470 IPR029058 -
Trre5g04563 470 FunFam Carboxypeptidase 324 469 - -
Trre5g04563 470 Pfam Serine carboxypeptidase 34 467 IPR001563 GO:0004185|GO:0006508
Trre5g04563 470 SUPERFAMILY alpha/beta-Hydrolases 30 468 IPR029058 -
Trre5g04563 470 FunFam Serine carboxypeptidase-like 11 24 470 - -
Trre5g04563 470 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 29 454 IPR001563 GO:0004185|GO:0006508
Trre5g04563 470 FunFam Carboxypeptidase 372 467 - -
Trre5g04563 470 PRINTS Carboxypeptidase C serine protease (S10) family signature 166 191 IPR001563 GO:0004185|GO:0006508
Trre5g04563 470 PRINTS Carboxypeptidase C serine protease (S10) family signature 118 130 IPR001563 GO:0004185|GO:0006508
Trre5g04563 470 PRINTS Carboxypeptidase C serine protease (S10) family signature 131 141 IPR001563 GO:0004185|GO:0006508
Trre5g04563 470 PRINTS Carboxypeptidase C serine protease (S10) family signature 437 450 IPR001563 GO:0004185|GO:0006508
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g04563 Trre-Chr5 47540969 47544186 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g04563 27 53 Calmodulin-binding Proteins AT2G22960 70.370 3.10e-06 45.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g04563 K16296 - gmx:100792006 638.262