Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g04562 ATGGTGAAGTTCCTTATCCTATTTGTACTTGAGTTCCTTATCCAATTACACCTTATCTTTGCAACATCTGAATCCAATATTGTGAAGTTCCTTCCTGGTTTTCAAGGACCCCTTCCTTTTCTACTAGAAACTGGATACATTGAAGTAAGTGAACTTGAAACAGATGAAAATGCAGAACTGTTCTACTTTTTTATAGAATCTGAGAACAATCCTAAGGAAGATCCTCTCTTGCTTTGGCTTACCGGTGGTCCTGGTTGCTCTGCCTTCTCCGGCCTTGCCTTTGAAATAGGTCCAATAACATTTATTAATGAGGAATACAATGGGAGCTTACCAAATTTAGCATTGAGACCACATTCATGGACAAAGGTTAGTAATATTATATTTTTGGATTTGCCTGTTGGTACTGGATTCTCATATCCCAAAACAGAAGCTGCATTTCAGCAAAGTACTTGGAAACTAGTTCACAATGCTCATCAATTTCTTAGGAAGTGGCTGAATGATCATCCAAAATTTCTATCAAATGAAGTGTACATTGCTGGTGACTCATACTCGGGCCTTCCTGTCCCAATTATTGTTCAAGAGATTTCATATGGAAATGATGATGGCCTCCAACCGTGGATAAACCTCCAAGGATACATACTGGGAAATCCCTTAACAACACCAAAAAGAGATAATTACAAAATACCATTTAGTCATGGCATGGCACTAATTTCTGATGAACTCTACCAGTCCCTAGAAAAGAACTGTAGAGGCGAGTACAAACATATAGATCCCAAAAACGTATTTTGTTTGAAAGATTTCCAATCCTACAAGGAGGCTATTTCAAATGTGTGTCAGCCTCATATTTTGGATCCAAACTGCGAGTCTGATTTTGATAAGATAATTGAGGTTCCTCGGAGGACACTTCTTATCGATAAAGCTGATCAATCCATTATTAGTTCTTCTCTCAAAACGCCGCCTTTAAGTTGTCGGACTCATGTATATTTCCTCTGTCCTTATTGGGCTAACGATGATAACGTTCGCAAAGCACTGCACATTCGAAAGGGAAGTATAGAGAAATGGAAGCGATGTAACAGCGACATACCATTTAAGCATGAAATCATTAACAGCTTCCCATATCATGCAAATCTTAGCAGAAAAGGTTTTCGTTCATTAATATACAGCGGGGATCATGACATGGAAGTTCCATTCTTGGAGACTCAAGCGTGGATAAGATCTTTAAACTATTCCATTGTTGACGATTGGAGGCAATGGTATTCTAATGCTCAAGTATCAGGATACACTAGGACTTACTCAAATCGGATGACATTTGCAACTGTGAAGGGGGGAGGACATACTGCTCCAGAGTACAAACCTGAAGAATGCTTAGCCATGTTGACAAGTTGGTTATCTAATAAGCCACTCTAG 1407 0.3902 MVKFLILFVLEFLIQLHLIFATSESNIVKFLPGFQGPLPFLLETGYIEVSELETDENAELFYFFIESENNPKEDPLLLWLTGGPGCSAFSGLAFEIGPITFINEEYNGSLPNLALRPHSWTKVSNIIFLDLPVGTGFSYPKTEAAFQQSTWKLVHNAHQFLRKWLNDHPKFLSNEVYIAGDSYSGLPVPIIVQEISYGNDDGLQPWINLQGYILGNPLTTPKRDNYKIPFSHGMALISDELYQSLEKNCRGEYKHIDPKNVFCLKDFQSYKEAISNVCQPHILDPNCESDFDKIIEVPRRTLLIDKADQSIISSSLKTPPLSCRTHVYFLCPYWANDDNVRKALHIRKGSIEKWKRCNSDIPFKHEIINSFPYHANLSRKGFRSLIYSGDHDMEVPFLETQAWIRSLNYSIVDDWRQWYSNAQVSGYTRTYSNRMTFATVKGGGHTAPEYKPEECLAMLTSWLSNKPL 468
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g04562 468 FunFam Carboxypeptidase 370 465 - -
Trre5g04562 468 FunFam Serine carboxypeptidase-like 11 22 468 - -
Trre5g04562 468 FunFam Carboxypeptidase 322 467 - -
Trre5g04562 468 SUPERFAMILY alpha/beta-Hydrolases 28 467 IPR029058 -
Trre5g04562 468 Gene3D alpha/beta hydrolase 38 468 IPR029058 -
Trre5g04562 468 Pfam Serine carboxypeptidase 32 465 IPR001563 GO:0004185|GO:0006508
Trre5g04562 468 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 27 452 IPR001563 GO:0004185|GO:0006508
Trre5g04562 468 PRINTS Carboxypeptidase C serine protease (S10) family signature 129 139 IPR001563 GO:0004185|GO:0006508
Trre5g04562 468 PRINTS Carboxypeptidase C serine protease (S10) family signature 164 189 IPR001563 GO:0004185|GO:0006508
Trre5g04562 468 PRINTS Carboxypeptidase C serine protease (S10) family signature 435 448 IPR001563 GO:0004185|GO:0006508
Trre5g04562 468 PRINTS Carboxypeptidase C serine protease (S10) family signature 116 128 IPR001563 GO:0004185|GO:0006508
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g04562 Trre-Chr5 47535098 47537811 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g04562 25 51 Calmodulin-binding Proteins AT2G22960 70.370 3.23e-06 45.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g04562 K16296 - gmx:100792006 638.262