Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g04561 ATGTTTATCTTTGTGCTCCTAGTAATAGTATTACAGAATTATTCATCCAAACATCCTGCATTTGCAATTACAACATCTGAATCCAATATTGTGAAGTTCCTTCCTGGTTTTCAAGGACCTCTTCCTTTTCTGCTCGAAACCGGGTATATTGAAGTAAGTAGTGAAACTGAAATAGATGAGAATGCTGAAGTGTTTTACTATTTTTTAGAATCTGAGAACAATCCTAAAGAAGATCCTCTCTTGCTTTGGCTTACTGGTGGTCCTGGTTGCTCTGCTTTCTCTGGCCTTGCCTTTGAAATAGGTCCATTAGCATTTAAAAATGAGGTATACAATGGGAGCTTTCCAAATTTGGTCTTGAGGCAACATTCATGGACAAAGGTTAGTAATATTATATTTTTGGATTTGCCTGCTGGTACTGGATTCTCATATCCCAAAACAGAAGCTGCTGTTCAGCAAAGCACTTGGAAACTAGTTCACAATGCTCATCAATTTCTTAGGAAGTGGCTGAATGATCATCCAAAATTTCTATCAAATGAAGTGTACATTGCTGGTGACTCATACTCAGGCATTCCTGTCCCAATTATTGTTCAAGAAATTTCATATGGAAATGAAGGTGGAGTCCAACCGTGGATAAACCTCCAAGGATACATACTGGGAAATCCCGTTACAACATCAAAAGAAGATAATTACAAAATACCATTTAATCATGGCATGGCACTAATTTCTGATGAACTTTACCTGTCACTGCAAAAGAATTGTAAAGGCGAGTACACAAATATAGAGCCCCAAAATGTACTTTGTCTGAGAGTCTTCCAATCCTACAAGGAGACTATTTCAGGAGTATTCGAGCCTCATATTTTGGAACCAAAATGCGAAGAAGATTTTAATAATCAAATGGAAGTTCCGAGTAGGAAACTTATTGATAAGGCTCGCGACATTTTTAATTCTTCTCTCACAATGCCGTCTTTATATTGTCGGACTGATGCATATTTCCTCGGTTTCTATTGGGCTAACGACAATAATGTTCGCAAAGCACTGCACATTCGAAAGGGAAGTATAGGAAAATGGAAGCGATGTAACTTCTACATACCATTTAAGCATGAAATCAATAACAGCTTCCCATATCATGCAAATCTTAGCAGAAAAGGTTTTCGTTCATTAATATACAGCGGGGATCATGACATGAAAGTTCCATTCTTGGCGACACAAGCGTGGATAAAATCTCTAAACTATTCCATTGTTGATGATTGGAGGCAATGGTATTCGAATGACCAAGTAGCAGGATACACGAGAACTTACTCAAATCAGATGACATTTGCAACCCTAAAGGGGGGAGGACATACTGCTCCAGAGTACAAACCTGAAGAATGCTTAGCCATGTTTAGTAGGTGGTTATCTAATAACCCACTTTAG 1413 0.3815 MFIFVLLVIVLQNYSSKHPAFAITTSESNIVKFLPGFQGPLPFLLETGYIEVSSETEIDENAEVFYYFLESENNPKEDPLLLWLTGGPGCSAFSGLAFEIGPLAFKNEVYNGSFPNLVLRQHSWTKVSNIIFLDLPAGTGFSYPKTEAAVQQSTWKLVHNAHQFLRKWLNDHPKFLSNEVYIAGDSYSGIPVPIIVQEISYGNEGGVQPWINLQGYILGNPVTTSKEDNYKIPFNHGMALISDELYLSLQKNCKGEYTNIEPQNVLCLRVFQSYKETISGVFEPHILEPKCEEDFNNQMEVPSRKLIDKARDIFNSSLTMPSLYCRTDAYFLGFYWANDNNVRKALHIRKGSIGKWKRCNFYIPFKHEINNSFPYHANLSRKGFRSLIYSGDHDMKVPFLATQAWIKSLNYSIVDDWRQWYSNDQVAGYTRTYSNQMTFATLKGGGHTAPEYKPEECLAMFSRWLSNNPL 470
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g04561 470 FunFam Serine carboxypeptidase-like 11 25 470 - -
Trre5g04561 470 PRINTS Carboxypeptidase C serine protease (S10) family signature 437 450 IPR001563 GO:0004185|GO:0006508
Trre5g04561 470 PRINTS Carboxypeptidase C serine protease (S10) family signature 133 143 IPR001563 GO:0004185|GO:0006508
Trre5g04561 470 PRINTS Carboxypeptidase C serine protease (S10) family signature 120 132 IPR001563 GO:0004185|GO:0006508
Trre5g04561 470 PRINTS Carboxypeptidase C serine protease (S10) family signature 168 193 IPR001563 GO:0004185|GO:0006508
Trre5g04561 470 Gene3D alpha/beta hydrolase 41 470 IPR029058 -
Trre5g04561 470 SUPERFAMILY alpha/beta-Hydrolases 31 469 IPR029058 -
Trre5g04561 470 FunFam Carboxypeptidase 372 467 - -
Trre5g04561 470 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 30 454 IPR001563 GO:0004185|GO:0006508
Trre5g04561 470 Pfam Serine carboxypeptidase 35 467 IPR001563 GO:0004185|GO:0006508
Trre5g04561 470 FunFam Carboxypeptidase 324 469 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g04561 Trre-Chr5 47528029 47531936 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g04561 29 63 Calmodulin-binding Proteins AT2G22960 60.000 2.23e-06 46.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g04561 K16296 - gmx:100792006 628.632