Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g04560 ATGAGTTTGTATTACAATGGAAATATCAATAGAAATACCACTACTATGTTTATCTTTGTGCTCCTAGTAATAGTATTACAGAATTATTCATCCAAACATCCTGCATTTGCAATTACAACATCTGAATCCAATATTGTGAAGTTCCTTCCTGGTTTTCAAGGACCTCTTCCTTTTCTGCTCGAAACCGGGTATATTGAAGTAAGTAGTGAAACTGAAATAGATGAGAATGCTGAAGTGTTTTACTATTTTTTAGAATCTGAGAACAATCCTAAAGAAGATCCTCTCTTGCTTTGGCTTACTGGTGGTCCTGGTTGCTCTGCTTTCTCTGGCCTTGCCTTTGAAATAGGTCCATTAGCATTTAAAAATGAGGTATACAATGGGAGCTTTCCAAATTTGGTCTTGAGGCAACATTCATGGACAAAGGTTAGTAATATTATATTTTTGGATTTGCCTGCTGGTACTGGATTCTCATATCCCAAAACAGAAGCTGCTGTTCAGCAAAGCACTTGGAAACTAGTTCACAATGCTCATCAATTTCTTAGGAAGTGGCTGAATGATCATCCAAAATTTCTATCAAATGAAGTGTACATTGCTGGTGACTCATACTCAGGCATTCCTGTCCCAATTATTGTTCAAGAAATTTCATATGGAAATGAAGGTGGAGTCCAACCGTGGATAAACCTCCAAGGATACATACTGGGAAATCCCGTTACAACATCAAAAGAAGATAATTACAAAATACCATTTAATCATGGCATGGCACTAATTTCTGATGAACTTTACCTGTCACTGCAAAAGAATTGTAAAGGCGAGTACACAAATATAGAGCCCCAAAATGTACTTTGTCTGAGAGTCTTCCAATCCTACAAGGAGACTATTTCAGGAGTATTCGAGCCTCATATTTTGGAACCAAAATGCGAAGAAGATTTTAATAATCAAATGGAAGTTCCGAGTAGGAAACTTATTGATAAGGCTCGCGACATTTTTAATTCTTCTCTCACAATGCCGTCTTTATATTGTCGGACTGATGCATATTTCCTCGGTTTCTATTGGGCTAACGACAATAATGTTCGCAAAGCACTGCACATTCGAAAGGGAAGTATAGGAAAATGGAAGCGATGTAACTTCTACATACCATTTAAGCATGAAATCAATAACAGCTTCCCATATCATGCAAATCTTAGCAGAAAAGGTTTTCGTTCATTAATATACAGCGGGGATCATGACATGAAAGTTCCATTCTTGGCGACACAAGCGTGGATAAAATCTCTAAACTATTCCATTGTTGATGATTGGAGGCAATGGTATTCGAATGACCAAGTAGCAGGATACACGAGAACTTACTCAAATCAGATGACATTTGCAACCCTAAAGGGGGGAGGACATACTGCTCCAGAGTACAAACCTGAAGAATGCTTAGCCATGTTTAGTAGGTGGTTATCTAATAACCCACTTTAG 1458 0.3779 MSLYYNGNINRNTTTMFIFVLLVIVLQNYSSKHPAFAITTSESNIVKFLPGFQGPLPFLLETGYIEVSSETEIDENAEVFYYFLESENNPKEDPLLLWLTGGPGCSAFSGLAFEIGPLAFKNEVYNGSFPNLVLRQHSWTKVSNIIFLDLPAGTGFSYPKTEAAVQQSTWKLVHNAHQFLRKWLNDHPKFLSNEVYIAGDSYSGIPVPIIVQEISYGNEGGVQPWINLQGYILGNPVTTSKEDNYKIPFNHGMALISDELYLSLQKNCKGEYTNIEPQNVLCLRVFQSYKETISGVFEPHILEPKCEEDFNNQMEVPSRKLIDKARDIFNSSLTMPSLYCRTDAYFLGFYWANDNNVRKALHIRKGSIGKWKRCNFYIPFKHEINNSFPYHANLSRKGFRSLIYSGDHDMKVPFLATQAWIKSLNYSIVDDWRQWYSNDQVAGYTRTYSNQMTFATLKGGGHTAPEYKPEECLAMFSRWLSNNPL 485
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g04560 485 FunFam Carboxypeptidase 339 484 - -
Trre5g04560 485 FunFam Serine carboxypeptidase-like 11 40 485 - -
Trre5g04560 485 FunFam Carboxypeptidase 387 482 - -
Trre5g04560 485 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 45 469 IPR001563 GO:0004185|GO:0006508
Trre5g04560 485 Gene3D alpha/beta hydrolase 56 485 IPR029058 -
Trre5g04560 485 Pfam Serine carboxypeptidase 50 482 IPR001563 GO:0004185|GO:0006508
Trre5g04560 485 SUPERFAMILY alpha/beta-Hydrolases 46 484 IPR029058 -
Trre5g04560 485 PRINTS Carboxypeptidase C serine protease (S10) family signature 452 465 IPR001563 GO:0004185|GO:0006508
Trre5g04560 485 PRINTS Carboxypeptidase C serine protease (S10) family signature 148 158 IPR001563 GO:0004185|GO:0006508
Trre5g04560 485 PRINTS Carboxypeptidase C serine protease (S10) family signature 183 208 IPR001563 GO:0004185|GO:0006508
Trre5g04560 485 PRINTS Carboxypeptidase C serine protease (S10) family signature 135 147 IPR001563 GO:0004185|GO:0006508
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g04560 Trre-Chr5 47527984 47531936 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g04560 44 78 Calmodulin-binding Proteins AT2G22960 60.000 2.09e-06 46.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g04560 K16296 - gmx:100792006 630.172