Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g04557 ATGCATTTGAAGTCCCCCCCCCCCCCCCCTCCATGTCAAAAACAGAAAATTCTAAAGTCTACCCCAAAGGAATTAACCAAACGACGACACAAAAAAACAGATTTGAAATCCACACCAAAGAAATCAAACAAACAACATCAGTATAAGCATTCAAGGAGACCAGCCATTGTAAAGCTGAATTCTGATGGAAGCTATGGTTGGGAGAAGATTGTAACTAGAGCTGGTGCAGCCGATGCAAAACCTCAAGTCATGCATTTTCCTAAGCAATTTTCTAGATTGTTTTTGGGAAAAAAACAAAACAAAGTGTTGGTCCAAGCTGAAGCAGGAGATACATTCTCTTGCAAGATTATGACAGCGACAAGGAATAGAGATGAAAAATACATATCAAAAGAGTGGACCAAATTTGTGAGAAGAAACAACCTCCAAGTTGGAGACAAGCTCATTTTCACTCTTCAAAACCAACCAACAAAACTCATGATTCAGATCATCCGTTGTAGTGTACACGACTGA 510 0.3961 MHLKSPPPPPPCQKQKILKSTPKELTKRRHKKTDLKSTPKKSNKQHQYKHSRRPAIVKLNSDGSYGWEKIVTRAGAADAKPQVMHFPKQFSRLFLGKKQNKVLVQAEAGDTFSCKIMTATRNRDEKYISKEWTKFVRRNNLQVGDKLIFTLQNQPTKLMIQIIRCSVHD 169
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g04557 169 MobiDBLite consensus disorder prediction 1 53 - -
Trre5g04557 169 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 23 165 IPR044837 -
Trre5g04557 169 MobiDBLite consensus disorder prediction 1 15 - -
Trre5g04557 169 Pfam B3 DNA binding domain 84 164 IPR003340 GO:0003677
Trre5g04557 169 SMART B3_2 68 166 IPR003340 GO:0003677
Trre5g04557 169 MobiDBLite consensus disorder prediction 23 53 - -
Trre5g04557 169 SUPERFAMILY DNA-binding pseudobarrel domain 82 164 IPR015300 -
Trre5g04557 169 CDD B3_DNA 84 164 IPR003340 GO:0003677
Trre5g04557 169 ProSiteProfiles B3 DNA-binding domain profile. 69 166 IPR003340 GO:0003677
Trre5g04557 169 Gene3D - 12 166 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g04557 Trre-Chr5 47516413 47517208 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Trre5g04557 B3 2.7e-11 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g04557 - - tpra:123904760 97.8265