Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g04556 ATGCTGGACTCCTTAGTGTCGCTCCATGGTAAACATGGTTTCCAAAATGTTGTGGAAGCTTCTGCTATGATGGCTGCTTCTTTAGTTTCTCTTTTTGAGCGCAAGAGTAATTCAAATATCGGCTGGCTTTATGATTTTCTTCTTTGTATATGTTATAATCCTTTGGAGAGGAGAGTGAAAAAAACAGATTTGAAATCCACACCAAAGAAATCAAACAAACAACATCAGTATAAGCATTCAAGGAGACCAGCCATTGTAAAGCTGAATTCTGATGGAAGCTATGGTTGGGAGAAGATTGTAACTAGAGCTGGTGCAGCCGATGCAAAACCTCAAGTCATGCATTTTCCTAAGCAATTTTCTAGATTGTTTTTGGGAAAAAAACAAAACAAAGTGTTGGTCCAAGCTGAAGCAGGAGATACATTCTCTTGCAAGATTATGACAGCGACAAGGAATAGAGATGAAAAATACATATCAAAAGAGTGGACCAAATTTGTGAGAAGAAACAACCTCCAAGTTGGAGACAAGCTCATTTTCACTCTTCAAAACCAACCAACAAAACTCATGATTCAGATCATCCGTTGTAGTGTACACGACTGA 597 0.3836 MLDSLVSLHGKHGFQNVVEASAMMAASLVSLFERKSNSNIGWLYDFLLCICYNPLERRVKKTDLKSTPKKSNKQHQYKHSRRPAIVKLNSDGSYGWEKIVTRAGAADAKPQVMHFPKQFSRLFLGKKQNKVLVQAEAGDTFSCKIMTATRNRDEKYISKEWTKFVRRNNLQVGDKLIFTLQNQPTKLMIQIIRCSVHD 198
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g04556 198 CDD B3_DNA 113 193 IPR003340 GO:0003677
Trre5g04556 198 Gene3D - 56 195 IPR015300 -
Trre5g04556 198 ProSiteProfiles B3 DNA-binding domain profile. 98 195 IPR003340 GO:0003677
Trre5g04556 198 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 83 194 IPR044837 -
Trre5g04556 198 SUPERFAMILY DNA-binding pseudobarrel domain 109 193 IPR015300 -
Trre5g04556 198 SMART B3_2 97 195 IPR003340 GO:0003677
Trre5g04556 198 MobiDBLite consensus disorder prediction 62 82 - -
Trre5g04556 198 Pfam B3 DNA binding domain 113 193 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g04556 Trre-Chr5 47516413 47518872 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Trre5g04556 B3 4e-11 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g04556 - - tpra:123904760 96.2857