Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g04555 ATGACAAGGTTTAATAGTTCGCATTACAATGGCAATAGCAATAGTTTTACTACTATACTATTTGTCTTTGTGCTCCTAGTATTATTACAGACACACCTTATCATTGCAACATCTGAATCCAATATTGTGAAGTTCCTTCCTGGTTTTCAAGGGCCACTTCCTTTTCTACTAGAAACTGGATACGTTGAAGTAAGTGAAACTGAATCAGATGAGAATGCAGAAGTTTTCTACTATTTTATAGAATCTGAAAACAATCCTATGGAAGATCCTCTCTTGCTTTGGCTTACTGGTGGTCCTGGTTGCTCTGGTTTCTCTGGCATTTTCTTTGAAATAGGTCCAATAACATTTATAAATGATGAATACAATGGGAGCTTACCAAATTTGGCATTGAAGTCACATTCATGGACAAAGGTTAGTAATATTATATTTTTGGATTTGCCTGTTGGTACTGGATTCTCATATCCCAAAACAGATGCTGCTGTTCAGCAAAGCACTTGGAAACTAGTTCACAATGCTCATCAATTTCTTCGAAAGTGGCTGGTTGATCATCCAAAATTTATCTCACATAAAGTATACATTGCTGGCGACTCATACTCTGGCATTCCTCTCCCAATCATTGTTCAAGAAATTTCATATGGAAATGATGATGGCCTCCAACCATGGATAAACCTCCAAGGATACATACTGGGAAATCCCTTAACAACACCAAATAACGATGATTACAGAATACCATTTAGTCATGGCATGGCACTAATTTCTGATGAACTCTACCAGTCACTGGAAAAGAATTGTAGAGGGGAGTATAAACATATAGATTCCCAAAACGTCTTTTGTTTGAAAGATTTCCAATCCTACAAGGAGGCTATTTCAAATGTGTGTCAGCCTCATATTTTGGATCCAAACTGCGAGTCTGATTTTGATAAGATAATTGAGGTTCCTCGGAGGACACTTCTTATCGATAAAGCTGATCAATCCATTATTAGTTCTTCTCTCAAAACGCCGCCTTTAAGTTGTCGGACTCATGTATATTTCCTCTGTCCTTATTGGGCTAACGATGATAACGTTCGCAAAGCACTGCACATTCGAAAGGGAAGTATAGGAAAATGGAAGCGATGTAACGGGGACCTACCTTTTAAGCATGAAACCCTTGACAGTTTTCCATATCATGCAAATCTTAGCAGAAAAGGCTTTCGTTCATTAATATACAGCGGGGATCATGACATGAAAGTTCCATTCTTAGCAACTCAAGCTTGGATAAAATCTTTAAATTACTCTATTGTTGATGATTGGAGGCAATGGTATTATAATGACCAAGTTGCAGGATACACGAGGACTTACTCAAATCGGATGACATTTGCAACTGTGAAGGGGGGAGGACATACAACTCCCGAATTCAAACCTGAAGAATGCTCAGCCATGTTCATTAGGTGGATATCTAATAAGCCACTTTAG 1452 0.3815 MTRFNSSHYNGNSNSFTTILFVFVLLVLLQTHLIIATSESNIVKFLPGFQGPLPFLLETGYVEVSETESDENAEVFYYFIESENNPMEDPLLLWLTGGPGCSGFSGIFFEIGPITFINDEYNGSLPNLALKSHSWTKVSNIIFLDLPVGTGFSYPKTDAAVQQSTWKLVHNAHQFLRKWLVDHPKFISHKVYIAGDSYSGIPLPIIVQEISYGNDDGLQPWINLQGYILGNPLTTPNNDDYRIPFSHGMALISDELYQSLEKNCRGEYKHIDSQNVFCLKDFQSYKEAISNVCQPHILDPNCESDFDKIIEVPRRTLLIDKADQSIISSSLKTPPLSCRTHVYFLCPYWANDDNVRKALHIRKGSIGKWKRCNGDLPFKHETLDSFPYHANLSRKGFRSLIYSGDHDMKVPFLATQAWIKSLNYSIVDDWRQWYYNDQVAGYTRTYSNRMTFATVKGGGHTTPEFKPEECSAMFIRWISNKPL 483
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g04555 483 Pfam Serine carboxypeptidase 47 480 IPR001563 GO:0004185|GO:0006508
Trre5g04555 483 FunFam Carboxypeptidase 337 482 - -
Trre5g04555 483 FunFam Carboxypeptidase 385 480 - -
Trre5g04555 483 PRINTS Carboxypeptidase C serine protease (S10) family signature 450 463 IPR001563 GO:0004185|GO:0006508
Trre5g04555 483 PRINTS Carboxypeptidase C serine protease (S10) family signature 179 204 IPR001563 GO:0004185|GO:0006508
Trre5g04555 483 PRINTS Carboxypeptidase C serine protease (S10) family signature 144 154 IPR001563 GO:0004185|GO:0006508
Trre5g04555 483 PRINTS Carboxypeptidase C serine protease (S10) family signature 131 143 IPR001563 GO:0004185|GO:0006508
Trre5g04555 483 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 42 467 IPR001563 GO:0004185|GO:0006508
Trre5g04555 483 SUPERFAMILY alpha/beta-Hydrolases 43 482 IPR029058 -
Trre5g04555 483 Gene3D alpha/beta hydrolase 53 483 IPR029058 -
Trre5g04555 483 FunFam Serine carboxypeptidase-like 11 37 483 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g04555 Trre-Chr5 47507997 47513600 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g04555 40 66 Calmodulin-binding Proteins AT2G22960 66.667 4.29e-06 45.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g04555 K16296 - gmx:100792006 627.476