Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g04554 ATGATCAACCTCTGGAATCTGCTTCATTTCCAAACTAAAATGACAAGGTTTAATAGTTCGCATTACAATGGCAATAGCAATAGTTTTACTACTATACTATTTGTCTTTGTGCTCCTAGTATTATTACAGACACACCTTATCATTGCAACATCTGAATCCAATATTGTGAAGTTCCTTCCTGGTTTTCAAGGGCCACTTCCTTTTCTACTAGAAACTGGATACGTTGAAGTAAGTGAAACTGAATCAGATGAGAATGCAGAAGTTTTCTACTATTTTATAGAATCTGAAAACAATCCTATGGAAGATCCTCTCTTGCTTTGGCTTACTGGTGGTCCTGGTTGCTCTGGTTTCTCTGGCATTTTCTTTGAAATAGGTCCAATAACATTTATAAATGATGAATACAATGGGAGCTTACCAAATTTGGCATTGAAGTCACATTCATGGACAAAGGTTAGTAATATTATATTTTTGGATTTGCCTGTTGGTACTGGATTCTCATATCCCAAAACAGATGCTGCTGTTCAGCAAAGCACTTGGAAACTAGTTCACAATGCTCATCAATTTCTTCGAAAGTGGCTGGTTGATCATCCAAAATTTATCTCACATAAAGTATACATTGCTGGCGACTCATACTCTGGCATTCCTCTCCCAATCATTGTTCAAGAAATTTCATATGGAAATGATGATGGCCTCCAACCATGGATAAACCTCCAAGGATACATACTGGGAAATCCCTTAACAACACCAAATAACGATGATTACAGAATACCATTTAGTCATGGCATGGCACTAATTTCTGATGAACTCTACCAGTCACTGGAAAAGAATTGTAGAGGGGAGTATAAACATATAGATTCCCAAAACGTCTTTTGTTTGAAAGATTTCCAATCCTACAAGGAGGCTATTTCAAATGTGTGTCAGCCTCATATTTTGGATCCAAACTGCGAGTCTGATTTTGATAAGATAATTGAGGTTCCTCGGAGGACACTTCTTATCGATAAAGCTGATCAATCCATTATTAGTTCTTCTCTCAAAACGCCGCCTTTAAGTTGTCGGACTCATGTATATTTCCTCTGTCCTTATTGGGCTAACGATGATAACGTTCGCAAAGCACTGCACATTCGAAAGGGAAGTATAGGAAAATGGAAGCGATGTAACGGGGACCTACCTTTTAAGCATGAAACCCTTGACAGTTTTCCATATCATGCAAATCTTAGCAGAAAAGGCTTTCGTTCATTAATATACAGCGGGGATCATGACATGAAAGTTCCATTCTTAGCAACTCAAGCTTGGATAAAATCTTTAAATTACTCTATTGTTGATGATTGGAGGCAATGGTATTATAATGACCAAGTTGCAGGATACACGAGGACTTACTCAAATCGGATGACATTTGCAACTGTGAAGGGGGGAGGACATACAACTCCCGAATTCAAACCTGAAGAATGCTCAGCCATGTTCATTAGGTGGATATCTAATAAGCCACTTTAG 1491 0.381 MINLWNLLHFQTKMTRFNSSHYNGNSNSFTTILFVFVLLVLLQTHLIIATSESNIVKFLPGFQGPLPFLLETGYVEVSETESDENAEVFYYFIESENNPMEDPLLLWLTGGPGCSGFSGIFFEIGPITFINDEYNGSLPNLALKSHSWTKVSNIIFLDLPVGTGFSYPKTDAAVQQSTWKLVHNAHQFLRKWLVDHPKFISHKVYIAGDSYSGIPLPIIVQEISYGNDDGLQPWINLQGYILGNPLTTPNNDDYRIPFSHGMALISDELYQSLEKNCRGEYKHIDSQNVFCLKDFQSYKEAISNVCQPHILDPNCESDFDKIIEVPRRTLLIDKADQSIISSSLKTPPLSCRTHVYFLCPYWANDDNVRKALHIRKGSIGKWKRCNGDLPFKHETLDSFPYHANLSRKGFRSLIYSGDHDMKVPFLATQAWIKSLNYSIVDDWRQWYYNDQVAGYTRTYSNRMTFATVKGGGHTTPEFKPEECSAMFIRWISNKPL 496
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g04554 496 FunFam Carboxypeptidase 398 493 - -
Trre5g04554 496 FunFam Serine carboxypeptidase-like 11 50 496 - -
Trre5g04554 496 Pfam Serine carboxypeptidase 60 493 IPR001563 GO:0004185|GO:0006508
Trre5g04554 496 SUPERFAMILY alpha/beta-Hydrolases 56 495 IPR029058 -
Trre5g04554 496 Gene3D alpha/beta hydrolase 66 496 IPR029058 -
Trre5g04554 496 PRINTS Carboxypeptidase C serine protease (S10) family signature 144 156 IPR001563 GO:0004185|GO:0006508
Trre5g04554 496 PRINTS Carboxypeptidase C serine protease (S10) family signature 463 476 IPR001563 GO:0004185|GO:0006508
Trre5g04554 496 PRINTS Carboxypeptidase C serine protease (S10) family signature 192 217 IPR001563 GO:0004185|GO:0006508
Trre5g04554 496 PRINTS Carboxypeptidase C serine protease (S10) family signature 157 167 IPR001563 GO:0004185|GO:0006508
Trre5g04554 496 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 54 480 IPR001563 GO:0004185|GO:0006508
Trre5g04554 496 FunFam Carboxypeptidase 350 495 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g04554 Trre-Chr5 47507958 47513600 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g04554 50 79 Calmodulin-binding Proteins AT2G22960 60.000 4.24e-06 45.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g04554 K16296 - gmx:100792006 627.476