Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g04552 ATGAAAGGAGAATACGTAGATCAAAATCCAAACAAAGGAACAGAAACACCACCACCTTCACTATTATTCTCGAAGCTTCATCAATCAAATTCTCAAAACAATCCATTTCATCCTTTTCAACTCTCTCATGAATGTCAACCAATCGGAGAAGATAGCGGCGGTGGCGGTGTTCAGAAACCGAACTCATCCGGCGATGGTGCGACAATCGAGGTTGTTAGACGACCAAGAGGACGTCCGCCTGGATCTAAAAACAGACCAAAACCGCCTGTTATTATAACACGCGATTCAGAACCTGCTATGAGTCCTTTTATTCTAGAAGTTTCTGGTGGAAACGACGTCGTTGAAGCTATTTCACAGTTTAGTCGTCGTAAGAATATTGGTTTATGTGTTTTAACTGGTTCAGGAGCGGTTGCTAACGTTACTCTCCGTCAACCGTCAACTACACCTGGAACTACCGTTACTTTTCACGGTCGTTTTGATATTCTTTCTGTAACCGCTACTTTTCTTCCTCAACAATCCGGTGGCGGTGGTTCTCCGGCGGTTCCTAGTGGATTCTCGATCTCGCTTGCTGGACCGCAAGGACAGATCGTTGGAGGAATTGTTGCTGGAAATTTGATAGCGGCGGGAACGGTTTTTATTATAGCTGCTTCGTTTAATAATCCGTCGTATTATAGGTTGCCGTTAGAAGAAGGTGGAAACTCGGTGTCTGGTGGTGGTGGTGGTGATGGAAATTCGCCGGCTGTTTCCGGTGCGGTGGATAGCGGTCAAGGTCAAGATGGTGAGTCGTGTGGGATGTCTATGTACAGCTGTCATATGCCATCATCTGATGTGATTTGGGCTCCATCTACAAGACCACCACCTTACTGA 867 0.4591 MKGEYVDQNPNKGTETPPPSLLFSKLHQSNSQNNPFHPFQLSHECQPIGEDSGGGGVQKPNSSGDGATIEVVRRPRGRPPGSKNRPKPPVIITRDSEPAMSPFILEVSGGNDVVEAISQFSRRKNIGLCVLTGSGAVANVTLRQPSTTPGTTVTFHGRFDILSVTATFLPQQSGGGGSPAVPSGFSISLAGPQGQIVGGIVAGNLIAAGTVFIIAASFNNPSYYRLPLEEGGNSVSGGGGGDGNSPAVSGAVDSGQGQDGESCGMSMYSCHMPSSDVIWAPSTRPPPY 288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g04552 288 SUPERFAMILY AF0104/ALDC/Ptd012-like 99 233 - -
Trre5g04552 288 Gene3D - 101 236 - -
Trre5g04552 288 MobiDBLite consensus disorder prediction 1 95 - -
Trre5g04552 288 Pfam Plants and Prokaryotes Conserved (PCC) domain 102 220 IPR005175 -
Trre5g04552 288 CDD DUF296 102 218 IPR005175 -
Trre5g04552 288 PIRSF ESCAROLA 11 282 IPR014476 GO:0003680
Trre5g04552 288 MobiDBLite consensus disorder prediction 9 40 - -
Trre5g04552 288 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 57 280 IPR014476 GO:0003680
Trre5g04552 288 FunFam AT-hook motif nuclear-localized protein 101 237 - -
Trre5g04552 288 ProSiteProfiles PPC domain profile profile. 97 239 IPR005175 -
Trre5g04552 288 MobiDBLite consensus disorder prediction 235 260 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g04552 Trre-Chr5 47485160 47486026 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g04552 1 288 AT-hook Motif Nuclear Localized (AHL) Family AT5G49700 57.096 8.81e-103 299
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g04552 - - gmx:100815772 363.614
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g04552 5 47485160 47486026 Trre5g04552 5 47485160 47486026 ECH