Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g04541 ATGGGTGGTGCCGTTCCAGAAAACCTAAACAGAGAACAGTATGTCTACTTAGCAAAACTAGCAGAACAAGCAGAACGCTATGAAGAGATGGTTTCCTTCATGCAGAAGCTAGTCGTATCTTCAACACCATCTTCCGAACTTAGCGTCGAAGAGAGAAACCTAATTTCCGTCGCTTACAAAAACGTCATCGGATCACTCCGTGCTGCTTGGAGAATCGTTTCTTCTATTGAACAGAAAGAAGAAAGTCGTAAGAATGAAGATCATGTTCTTCTTGTTCAACAATATAGATCTAAAGTTGAATCCGAATTGTCTAATGTTTGTGCTAGTATTCTTCAACTTTTGGATTCCAATCTTATTCCTTCTGCTTCTTCTAGTGAATCTAAGGTTTTTTATTATAAGATGAAAGGTGATTATCATAGGTATTTGGCTGAGTTTAAGATTGCTGATGAAAGAAAATCTGCTGCTGAGGATACTATGTTGTCTTACAAAGCTGCACAGGATATTGCTGCTGCTGATCTTCCATCTACTCATCCTATAAGATTGGGTTTGGCTCTCAATTTCTCTGTTTTCTATTATGAAATTCTCAACCAATCTGACAAAGCTTGTGCAATGGCCAAACAGGCTTTTGAGGAAGCAATTGCTGAGCTTGACACCTTGGGAGAAGAATCCTACAAAGACAGCACACTTATAATGCAACTTTTGAGAGACAACCTCACCCTTTGGACTTCTGATGTCCAGGATCCGCTTGATGAGGCCTGA 759 0.3979 MGGAVPENLNREQYVYLAKLAEQAERYEEMVSFMQKLVVSSTPSSELSVEERNLISVAYKNVIGSLRAAWRIVSSIEQKEESRKNEDHVLLVQQYRSKVESELSNVCASILQLLDSNLIPSASSSESKVFYYKMKGDYHRYLAEFKIADERKSAAEDTMLSYKAAQDIAAADLPSTHPIRLGLALNFSVFYYEILNQSDKACAMAKQAFEEAIAELDTLGEESYKDSTLIMQLLRDNLTLWTSDVQDPLDEA 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g04541 252 PIRSF 14-3-3 6 251 IPR000308 -
Trre5g04541 252 Pfam 14-3-3 protein 17 242 IPR023410 -
Trre5g04541 252 PRINTS 14-3-3 protein zeta signature 161 187 IPR000308 -
Trre5g04541 252 PRINTS 14-3-3 protein zeta signature 95 119 IPR000308 -
Trre5g04541 252 PRINTS 14-3-3 protein zeta signature 188 214 IPR000308 -
Trre5g04541 252 PRINTS 14-3-3 protein zeta signature 126 148 IPR000308 -
Trre5g04541 252 PRINTS 14-3-3 protein zeta signature 46 75 IPR000308 -
Trre5g04541 252 PRINTS 14-3-3 protein zeta signature 215 244 IPR000308 -
Trre5g04541 252 Gene3D - 4 251 IPR036815 -
Trre5g04541 252 Coils Coil 17 37 - -
Trre5g04541 252 SMART 1433_4 11 251 IPR023410 -
Trre5g04541 252 ProSitePatterns 14-3-3 proteins signature 2. 224 243 IPR023409 -
Trre5g04541 252 PANTHER 14-3-3 PROTEIN 11 246 IPR000308 -
Trre5g04541 252 ProSitePatterns 14-3-3 proteins signature 1. 52 62 IPR023409 -
Trre5g04541 252 FunFam 14-3-3 protein epsilon 8 252 - -
Trre5g04541 252 SUPERFAMILY 14-3-3 protein 9 244 IPR036815 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g04541 Trre-Chr5 47397857 47399683 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g04541 8 246 14-3-3 family AT5G10450 84.100 3.28e-151 421
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g04541 K06630 - csv:101222827 439.113
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g04541 5 47397857 47399683 Trre5g04541 5 47397857 47399683 ECH