Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g04539 ATGGTAACACATGTAAGAGAAGAGACACTTCTCTCACTCACAAATCACAATATCACTTCTCAAAGTCCCATCTCAAGCAAGCAAAAATTCCTTAACAAGGTGGAAAACGAAATGGATTTTGAAGAACACGAAGACGAAGAAGAACAAGAGGAAGAAGAAGAAATGGGATTCCCGGTTACGCCGGTAGCAGGTTACGACTCGCTAGGAAACTCAGGTGTCAGGACTAAAATGAGCGGCGGCGGAGGAGCTGACGGAGGAGAAACAACACCAGCAACAATAACAACCACTGGCGGTGGTTGCAAAAACGGGCCCACAGGAACGGTTAGATACAGAGAATGTCAAAAGAATCACGCCGTTAGCATCGGAGGTCACGCCGTTGATGGATGTTGTGAGTTTTTAGCAGCTGGAGAAGAAGGAACACTAGAAGCCGTAATTTGCGCTGCGTGTAACTGTCACCGGAATTTTCACCGGAAAGAGATCGACGGCGAAATTACTTCTCATAATCAACAATCACGGTCGTCTCATCATGCTCATGCTCATGCTCAGTACCACCACCAGAATCATCAAGTATCCCCTTACTACCACCGTGCTGTGATACCTCCTCCGCCGGGGTACCACCACATGGTAACTCCATCGCCGGTATCACATCATAGGCCGTTAGCTCTTCCACCTGCTGCATCAAGTGGTGGATTCAGTAGAGAAGATGATGACGTGTCAATTCCGAGTAGCAGCGGTGGCGGTGGCGGTGGTGGTGGTGGTGGAAGTGGAATGAAGAAAAGGTTTAGAACAAAATTCACCGCGGAGCAGAAAGAAAAATTGCTTGCATTTGCGGAACAGATTGGATGGAGAATTCAGAAGGAAGATGAAGGTGCAATTGAACAATTCTGTGCTGAGAATTGTATTAAGAGAAATGTGCTTAAGGTTTGGATGCATAATAACAAGCACACTCGTGGTAAGAAACCCTAA 966 0.4669 MVTHVREETLLSLTNHNITSQSPISSKQKFLNKVENEMDFEEHEDEEEQEEEEEMGFPVTPVAGYDSLGNSGVRTKMSGGGGADGGETTPATITTTGGGCKNGPTGTVRYRECQKNHAVSIGGHAVDGCCEFLAAGEEGTLEAVICAACNCHRNFHRKEIDGEITSHNQQSRSSHHAHAHAQYHHQNHQVSPYYHRAVIPPPPGYHHMVTPSPVSHHRPLALPPAASSGGFSREDDDVSIPSSSGGGGGGGGGGSGMKKRFRTKFTAEQKEKLLAFAEQIGWRIQKEDEGAIEQFCAENCIKRNVLKVWMHNNKHTRGKKP 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g04539 321 FunFam Zinc-finger homeodomain protein 2 252 319 - -
Trre5g04539 321 MobiDBLite consensus disorder prediction 39 55 - -
Trre5g04539 321 Pfam ZF-HD protein dimerisation region 108 160 IPR006456 -
Trre5g04539 321 Coils Coil 31 53 - -
Trre5g04539 321 MobiDBLite consensus disorder prediction 38 101 - -
Trre5g04539 321 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 109 160 IPR006456 -
Trre5g04539 321 SUPERFAMILY Homeodomain-like 244 319 IPR009057 -
Trre5g04539 321 Gene3D - 243 319 - -
Trre5g04539 321 NCBIfam homeobox domain, ZF-HD class 258 314 IPR006455 -
Trre5g04539 321 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 110 159 IPR006456 -
Trre5g04539 321 MobiDBLite consensus disorder prediction 165 259 - -
Trre5g04539 321 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 92 316 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g04539 Trre-Chr5 47376975 47378735 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g04539 47 316 ZF-HD Transcription Factor Family AT4G24660 45.387 3.47e-63 198
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Trre5g04539 ZF-HD_dimer 3.1e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g04539 - - mtr:11435175 390.578
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g04539 5 47376975 47378735 Trre5g04539 5 47376975 47378735 ECH