Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g04534 ATGGCACCAAGTTTTGACTGTGTTAATAGCCTTCTTTGCACTGAGGAAGATAGCACTGTTTTTGATGATGCTGTTGATTCGATGGAAGAGGTGTACGAGGATTCGTGGCGTCCTAGGTTCGACCATCAGAGCAACCACCACCAACAACATCGATTTGATGCTGTTCCTGATGAGTTGCAATTGCAGAGTGAAGAGTGTTTGGTTCTGATGTTGGAAAAACAACTTCAACAATGGCCTGGTGTTGATTACTTGAATAGATTGCAATCTGGTGTTTTGGATGTTGCGGCAAGAACTGAAGCCATCGATTGGATTCAGAAGGTTCAAGCACATTTTGGTTTCGGTCCTCTCTGTGCTTATCTGTCCATTAATTATATGGATCGTTTCCTTGCTGCGTATGAATTGCCGAAGGGAAGGGCTTGGACAATGCAATTGTTGGCTGTTGCCTGCATATCTTTGGCGGCGAAAGTAGAGGAGACTAGTGTTCCTATGACTCTTGATTTGCAGATTGGTGAGTCGAAGTTTGTATTTGAAGCGAAAACCATTCAGAGAATGGAACTTCTAGTACTTAGTACATTGAAGTGGAGAATGCAATCAATTACTCCATTTTCCTTCATTGAATATTTCCTTTCTAAGATTACTGATAATGACGATAAGAGTTCATTAACATCTTCAATTTCGCAATCTACTCAACTTATATCAACTACCATTAAAGGTATTGACTTCTTGGAATTCAAACCATCAGAAATTGCAGCAGCAGTGGCTACATGTGTTGTTGGGGAAACCCAAGCAATTGATACCAACAAATCAATTTCAACTCTGATTCAATACATAGAAAAGGAGAGATTATTGAAGTGTATTGAAAAAGTCCAAGAAATGTCATTGAGCAGTGTTGTGACTGGCAAGGATTCAAATGCATCTGTCCCTAGTGTGCCTCAAAGCCCAATAGGTGTGTTGGATACATTATGCTTCAGCCAGAAAAGTGATGACACCAATGTTGGTGTTGGTGGTGGTGGATCATGTTCTTCTTCACATATCAGTAGCCCAGAAGCTAAGAGAAGAAAGCTAAACAAAACTTGTGGGGCAGAACTTTTGTAG 1095 0.4064 MAPSFDCVNSLLCTEEDSTVFDDAVDSMEEVYEDSWRPRFDHQSNHHQQHRFDAVPDELQLQSEECLVLMLEKQLQQWPGVDYLNRLQSGVLDVAARTEAIDWIQKVQAHFGFGPLCAYLSINYMDRFLAAYELPKGRAWTMQLLAVACISLAAKVEETSVPMTLDLQIGESKFVFEAKTIQRMELLVLSTLKWRMQSITPFSFIEYFLSKITDNDDKSSLTSSISQSTQLISTTIKGIDFLEFKPSEIAAAVATCVVGETQAIDTNKSISTLIQYIEKERLLKCIEKVQEMSLSSVVTGKDSNASVPSVPQSPIGVLDTLCFSQKSDDTNVGVGGGGSCSSSHISSPEAKRRKLNKTCGAELL 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g04534 364 SUPERFAMILY Cyclin-like 61 196 IPR036915 -
Trre5g04534 364 ProSitePatterns Cyclins signature. 97 128 IPR006671 -
Trre5g04534 364 SMART Cyclin_C_2 199 324 IPR004367 -
Trre5g04534 364 PANTHER CYCLINS 62 291 IPR039361 -
Trre5g04534 364 Pfam Cyclin, N-terminal domain 69 196 IPR006671 -
Trre5g04534 364 Gene3D - 70 288 - -
Trre5g04534 364 FunFam D6-type cyclin 193 287 - -
Trre5g04534 364 CDD CYCLIN_AtCycD-like_rpt2 199 289 - -
Trre5g04534 364 Gene3D - 80 197 - -
Trre5g04534 364 FunFam D2/4-type cyclin 80 192 - -
Trre5g04534 364 SUPERFAMILY Cyclin-like 181 292 IPR036915 -
Trre5g04534 364 Pfam Cyclin, C-terminal domain 199 296 IPR004367 -
Trre5g04534 364 SMART cyclin_7 102 190 IPR013763 -
Trre5g04534 364 CDD CYCLIN_AtCycD-like_rpt1 96 194 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g04534 Trre-Chr5 47310404 47312548 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g04534 70 332 Core Cell Cycle Gene Families AT2G22490 47.778 1.85e-82 253
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g04534 K18810 - gmx:547739 451.055
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g04534 5 47310404 47312548 Trre5g04534 5 47310404 47312548 ECH