Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g04527 ATGCAAGCCCCAGGCTGCTTTCTCTTGTTCTCATTTGTCCTCTTTTCATCGACATCAATTTTATCCCATGCACTTTCAAATGAAGAAGTTTCTTTTATAGCACGTCGTCAATTGTTACACCTTCAAGAAAACGAGGATTTACCTGAAAACTTCGCAGATACTTATCAAACAAATTTAACTTTTCCTAACGATGGAATCAAACGTGCTTACATAGCACTTCAAGCATGGAAAAATGCAATTTATTCAGACCCATCAAATGTCACGACGAATTGGGTGGGTCCTGATGTATGTTCTTACCAAGGAATTTTTTGTGCACCTTCTCTTAATGATTCAAAAGTTGAAGTTGTAGCTGGAATTGATCTTAATCATGCAGACATTGCAGGTTATATTCCTTCAGAGTTTGGTTTGTTGACTGATCTTGCTCTTTTTCATATAAACACAAACAGATTTTGTGGTATTATCCCAAAAAGCTTCTCTAAGTTAAAACTTTTGTATGAGTTCGATATTAGTAACAACCGCTTTGTTGGAAGATTTCCCACACCTATTCTTTCCATTCCTGATATCAAATACATGGATATCAGGTACAATGATTTTGAAGGAGAAATTCCTTCCGAGCTTTTTAATAAACCACTCGACGCTATATTTATGAACAACAACAGATTCACATCAACAATTCCAGAGAATTTGGGAAATTCTCCTGCATCAGTTGTTGTTTTGGCCCATAACCATCTTAGTGGTTGTATTCCTGCAAGCATTGGTGACATGAAAAATACATTGAATGAATTTGTTTTATTAGACAATAATGTCACCGGTTGTTTGCCTCCAGAAATTGGAAAGCTTGAACAAGTCACTGTTTTTGACGTGAGTCAAAATGTGCTTGTTGGTATGTTGCCAAAGACATGCAATGGTCTCAATAAAGTGGAAATTTTGTCTATTGCAGATAACAAACTTACAGGTTTTGTTCCAAGAAGTATATGTAGTCTGTCTAATTTGGGGAACTTTACATTCTCAAATAACTATTTCAATGGTGAGGAAGAAGGTTGTGTTCCTCCTGGAAAAAACATTGTGTTGGATGATACTTATAATTGTATACCTGAAAGACCAAAACAAAAGACATCAAATGATTGCAATGTTGTTATAAGCAAACCTGTTGATTGTAGCAAGGCACAATGTGTTAGTGGTAGCTCATCTCACTCCAATTCTCCACCAAGTGATCAACATCAAACACCAACACCTTCTGTTCCAAAGCCTAATCCAAATCCAACACCAAAACCTTCAAATCCTCCAAGTGAGAACCCAACACCTTCACCAACACCAACACCGACTACAAAGCCAACACCTACACCTTCCAACCCTTCACCAAAACCAACTCCATCAACACCAACTACAAAGCCAACACCTACACCTTCTAACCCTTCACCAAAGCCAACACCATCAACACCAAATCCAAAGCCAACACCTACACCTTCAACACCAAGCGAGAAACCACAACCCAAACCAACTCCATCACCATCTAATCCAACACCAAGTGAGAAGCCAACACCAAATCCACAACCCAAACCAACCCCAACACCGTCACCATCCAATCCACCACCAAGTGAGAAGCCTACACCAAAGCCACAACCCAAACCAACACCAACCCCATCATCACCATCCAATCCACCATCAAGCGATAAGCCGACACCAAAACCACTACCACCACCAACCCCTTCTGCACCTAAAGCGCAACCACCATCTGAAGATGATCCTCACCAAGAATCACCCAAAGGGAGAACAAGATCTCCACCACCACCAATTCACTCCCCGCCACCACCAGTTCATTCTCCACCACCACCAGTCCACTCTCCACCACCACCCGTTCATTCACCACCACCACCACCAGTCCACTCACCACCTCCACCAGTCCACTCACCACCGCCACCAGTTCAGTCACCACCTCCACCAGTCCACTCACCACCGCCACCAGTTCATTCACCACCACCACCGGTTCATTCCCCACCTCCACCAGTACACTCACCACCACCCCCTGTTCATTCACCTCCTCCACCAGTTCACTCCCCACCTCCACCAGTACATTCTCCTCCTCCTCCTGTCCACTCTCCACCACCACCTGTTCATTCTCCACCACCGCCTGTGCATTCTCCACCTCCGCCAATTAGATCCCCACCACCACCTGTTTACTCTCCTCCTCCACCTGTTCACTCCCCACCACCACCTGTTCACTCTCCTCCTCCGCCAGTTCACTCGCCGCCACCACCAGTTTTCTCACCGCCGCCACCAGTTCACTCTCCACCTCCACCTACTGCATCACCACCTCCTCCTGTTTATGCACCGCCTCCACAAGAAGATGATATTGTTCTGCCCCCTCACTTTGGTTCTTCATATGCTTCACCCCCTCCACCAATCATTGCTGGATACTAA 2421 0.4449 MQAPGCFLLFSFVLFSSTSILSHALSNEEVSFIARRQLLHLQENEDLPENFADTYQTNLTFPNDGIKRAYIALQAWKNAIYSDPSNVTTNWVGPDVCSYQGIFCAPSLNDSKVEVVAGIDLNHADIAGYIPSEFGLLTDLALFHINTNRFCGIIPKSFSKLKLLYEFDISNNRFVGRFPTPILSIPDIKYMDIRYNDFEGEIPSELFNKPLDAIFMNNNRFTSTIPENLGNSPASVVVLAHNHLSGCIPASIGDMKNTLNEFVLLDNNVTGCLPPEIGKLEQVTVFDVSQNVLVGMLPKTCNGLNKVEILSIADNKLTGFVPRSICSLSNLGNFTFSNNYFNGEEEGCVPPGKNIVLDDTYNCIPERPKQKTSNDCNVVISKPVDCSKAQCVSGSSSHSNSPPSDQHQTPTPSVPKPNPNPTPKPSNPPSENPTPSPTPTPTTKPTPTPSNPSPKPTPSTPTTKPTPTPSNPSPKPTPSTPNPKPTPTPSTPSEKPQPKPTPSPSNPTPSEKPTPNPQPKPTPTPSPSNPPPSEKPTPKPQPKPTPTPSSPSNPPSSDKPTPKPLPPPTPSAPKAQPPSEDDPHQESPKGRTRSPPPPIHSPPPPVHSPPPPVHSPPPPVHSPPPPPVHSPPPPVHSPPPPVQSPPPPVHSPPPPVHSPPPPVHSPPPPVHSPPPPVHSPPPPVHSPPPPVHSPPPPVHSPPPPVHSPPPPVHSPPPPIRSPPPPVYSPPPPVHSPPPPVHSPPPPVHSPPPPVFSPPPPVHSPPPPTASPPPPVYAPPPQEDDIVLPPHFGSSYASPPPPIIAGY 806
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g04527 806 MobiDBLite consensus disorder prediction 590 785 - -
Trre5g04527 806 SUPERFAMILY L domain-like 70 356 - -
Trre5g04527 806 PRINTS Proline rich extensin signature 411 423 - -
Trre5g04527 806 PRINTS Proline rich extensin signature 458 479 - -
Trre5g04527 806 PRINTS Proline rich extensin signature 445 457 - -
Trre5g04527 806 PRINTS Proline rich extensin signature 425 441 - -
Trre5g04527 806 MobiDBLite consensus disorder prediction 389 407 - -
Trre5g04527 806 Gene3D Ribonuclease Inhibitor 69 353 IPR032675 -
Trre5g04527 806 FunFam Leucine-rich repeat extensin-like protein 1 70 231 - -
Trre5g04527 806 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 9 551 - -
Trre5g04527 806 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 255 344 - -
Trre5g04527 806 MobiDBLite consensus disorder prediction 389 806 - -
Trre5g04527 806 MobiDBLite consensus disorder prediction 408 577 - -
Trre5g04527 806 Pfam Leucine rich repeat N-terminal domain 72 104 IPR013210 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g04527 Trre-Chr5 47214880 47217540 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g04527 24 507 Trihelix Transcription Factor Family AT4G33970 55.397 0.0 539
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g04527 - - gmx:100780677 607.06