Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g04524 ATGATGAAGTCAACTTCTGTTGTTTCTGGGTCAACATCGGCTGCTATGGGTATTATGGGTATTTCACCTTTCAAAACCTCTTCAATTATACCCTTTTTGCAGGGTTCAAAGTGGCTTCCTTGTAATGAATCTGTTGCTATTCCTACAACTTGGGAGGTTGATAAAGGTGGAACAGCAACACAGTGTGTTACTGTTTCTAACACAGAATCGCGTTTGAATTTGAATCAAAAGGAGAGTAGAAATAGTTGGATTTCCAAATTGTTGAATGTTTGTTCTGAAGATGCTAAAGCTGTTTTCACTGCTGTTACTGTTAGTTTATTGTTTAAATCGTTTTTGGCTGAACCTAAATCTATTCCTTCTGCTTCTATGTATCCAACTCTTCAAGTTGGTGATCGTGTTCTTACAGAAAAGTTTTCTTTCTTCTTTAGAAAGCCTGATGTTTCTGATATTGTGATTTTCAAAGCACCAGCTTGTTTGAAGGAATATGGTTTTAGTTCATCTGATGTTTTTATTAAAAGGGTTGTGGCTAAAGCTGGTGATGTTGTTGAAGTTCGTGGTGGGAAACTACTGATCAATGGTGTTGCTGAAGAAGAGGAATTCATATTAGAACCTCTTGCTTACGAGTTGGCTCCAATGGTTGTGCCAGAAGGACATGTGTTTGTGATGGGAGACAATCGTAACAAAAGTTTTGATTCTCATAACTGGGGTCCACTCCCGGTCGAGAACATTGTTGGTAGGTCTATGTTTCGCTACTGGCCTCCATCCAAAGTAGCTGACACTGTCACAGTTCATACAGCTCCACCTGGAAATAAATCTGTTTCAGTTTCTTGA 831 0.3899 MMKSTSVVSGSTSAAMGIMGISPFKTSSIIPFLQGSKWLPCNESVAIPTTWEVDKGGTATQCVTVSNTESRLNLNQKESRNSWISKLLNVCSEDAKAVFTAVTVSLLFKSFLAEPKSIPSASMYPTLQVGDRVLTEKFSFFFRKPDVSDIVIFKAPACLKEYGFSSSDVFIKRVVAKAGDVVEVRGGKLLINGVAEEEEFILEPLAYELAPMVVPEGHVFVMGDNRNKSFDSHNWGPLPVENIVGRSMFRYWPPSKVADTVTVHTAPPGNKSVSVS 276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g04524 276 Gene3D Umud Fragment, subunit A 108 265 - -
Trre5g04524 276 PRINTS Bacterial leader peptidase 1 (S26A) family signature 170 182 IPR000223 GO:0006508|GO:0008236|GO:0016020
Trre5g04524 276 PRINTS Bacterial leader peptidase 1 (S26A) family signature 111 127 IPR000223 GO:0006508|GO:0008236|GO:0016020
Trre5g04524 276 PRINTS Bacterial leader peptidase 1 (S26A) family signature 214 233 IPR000223 GO:0006508|GO:0008236|GO:0016020
Trre5g04524 276 NCBIfam signal peptidase I 97 253 IPR000223 GO:0006508|GO:0008236|GO:0016020
Trre5g04524 276 ProSitePatterns Signal peptidases I signature 3. 219 232 IPR019758 GO:0004252|GO:0016020
Trre5g04524 276 ProSitePatterns Signal peptidases I serine active site. 120 127 IPR019756 GO:0004252|GO:0016020
Trre5g04524 276 CDD S26_SPase_I 114 246 IPR019533 GO:0004252|GO:0006465
Trre5g04524 276 Pfam Signal peptidase, peptidase S26 95 252 IPR019533 GO:0004252|GO:0006465
Trre5g04524 276 SUPERFAMILY LexA/Signal peptidase 110 257 IPR036286 -
Trre5g04524 276 PANTHER SIGNAL PEPTIDASE I 80 258 IPR000223 GO:0006508|GO:0008236|GO:0016020
Trre5g04524 276 FunFam Peptidase/ serine-type peptidase 120 251 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g04524 Trre-Chr5 47200319 47201749 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g04524 123 253 MADS-box Gene Family AT1G29960 33.333 5.16e-14 65.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g04524 K03100 - gmx:100817525 419.853