Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g04485 ATGACTTCTACTGCTACTAACAAATCATCTTTCTCTTCTTCTTGTTCTTCGAATCAAGGTGGTAAAGGACAATCGATTCAGCAACGTAGACTTACTAGACAGAGGAGATTATGTTACCCTGGTGGTGGTGGTGATAATCAAGACGGTGAATCGTTTGATTCTAACGAAGCTGTTTCTTTTTCGTTACCGTCTTCTCCTTTAAGAACTAGTTCTGATCATTGGTCTTCTTCTGCTGTTCCTCAACCGCTTCCTCTTCCTGAGTCTCCGTTGACTCGTCATCATCATGCTGCTTTACCCTTTTCCAGAAGGACGGTGGATCATGATGCTTTGAGAAGTTTAAGGTCTTCTAGCAATTTGAGTAAACCCACTTTTGACACGGTGAATGGAAACACGAATTCTGATTTGAGAGTGAATATTCCACCTGCTAGAGGTTTGGTGTCAAGCAATAGTTCTTGTAAAGATACTGGAAAACACTCTCATGATAATGATTGTGACGGTATTTCCAACAACAAATATCAATTTGCTGCCAAGAGTGCCCCAACAAGCATATTCTCCAGTCCTGTTACTAGTCCACGCAGATTAAGCAGTGTAGATTTATTTCCTTCCATCAAATTTTCTCAAGATTTTAATGACATTTTGAGAATGCCTGCTAAAACTGCTCGTAGTCCAGACTTGTCTCCTCGTCGTAGCTTGGGGAACCACAGTCCTATTCATCGCCACACTATTCAAGGGGGATCCCATTCTCACCACTCTAAACATTGCTCCAGAGTGTCTCCTGAAAATAACCATGTTGATGCACATCCATTGCCCCTTCCACCGAGAGCTTCACCACCGCCGCAGCAATCACCTCCACAGCATCAATCAAATGTCATGTCGCATCACTCAACAGAAAATTTTCATTCAATGAAGGGTCAATGGCAGAAAGGAAAACTTATTGGACGAGGGTCGTTTGGAAGTGTTTATCAGGCAACAAACCTAGAGACTGGAGCCTCATGTGCAATGAAAGAGGTGGATCTGTTTCCTGATGATCCTAAATCTGCTGACTGCATAAAGCAACTAGACCAGGAAATCAGAATTCTCGGTCAACTACACCACCCCAACATTGTTCAATATTATGGCAGTGAAATAGTTGGTGATCAATTGTGCATATATATGGAATATGTCCATCCTGGATCATTAACTAAGTTTATGCATGAACATTGTGGGGCTATGACAGAATCTGTGGTTCGCAATTTTACGCGGCATATTCTCTCTGGTTTGGCGTACTTACATAGTACCAAGACTATCCACAGAGACATTAAAGGTGCAAACTTGCTGGTTGATGCGTCAGGCATTGTCAAGCTAGCAGATTTTGGGGTGTCAAAAATTCTGACAGAGAAATCATATGAACTTTCGCTGAAAGGAAGTCCGTATTGGATGGCTCCAGAGCTCATGATGGCTGCCATGAAGAATGAAACCAATCCCAATGTCGCCATGGCTGTCGATATATGGAGCTTAGGATGCACCATCATCGAAATGCTGACAGGAAAACCCCCTTGGAGCGAGTTTCCAGGGCATCAAGCCATGTTCAAGGTACTGCATAGATCCCCGGACATACCCAAAAATTTATCCCCAGAAGGACAGGATTTCCTTGAGCAGTGTTTCCGAAGGAATCCTGCAGAACGACCATCTGCAGCGATGCTTCTGACACATGCCTTTGTGCAAAATTTGCATGATCAAGATATTATAGTTCATTCACAAGTCTGTCATAAAGAAGACACCATAGTTCATTCACAAGGATATAAAGAAGACACTGGATCCAAAGATGAACCGCGTAAACATAGTCCAGGACACAGTTCAAAACATAGCCGTGGTGTAGTGCCAGCTTCCTTTCGTGCGCGGATTTTTTGCAAAATTCAAAATTTAATCGGTGACACTTCCAAAAAAGCTGATACCGAGGAATCTAATCATATTAGATCTTCTCCTCTATCTCCTTGCTCGCTGACTGATGTTAACAGTCCTCAATCTCCCTTTAATCCTAATAACCGCAATTGCATGACTGTTACCAAACCATCCAACATACCCTTCACGATTATGAGAATCGTGAAGCATCTATGA 2097 0.4258 MTSTATNKSSFSSSCSSNQGGKGQSIQQRRLTRQRRLCYPGGGGDNQDGESFDSNEAVSFSLPSSPLRTSSDHWSSSAVPQPLPLPESPLTRHHHAALPFSRRTVDHDALRSLRSSSNLSKPTFDTVNGNTNSDLRVNIPPARGLVSSNSSCKDTGKHSHDNDCDGISNNKYQFAAKSAPTSIFSSPVTSPRRLSSVDLFPSIKFSQDFNDILRMPAKTARSPDLSPRRSLGNHSPIHRHTIQGGSHSHHSKHCSRVSPENNHVDAHPLPLPPRASPPPQQSPPQHQSNVMSHHSTENFHSMKGQWQKGKLIGRGSFGSVYQATNLETGASCAMKEVDLFPDDPKSADCIKQLDQEIRILGQLHHPNIVQYYGSEIVGDQLCIYMEYVHPGSLTKFMHEHCGAMTESVVRNFTRHILSGLAYLHSTKTIHRDIKGANLLVDASGIVKLADFGVSKILTEKSYELSLKGSPYWMAPELMMAAMKNETNPNVAMAVDIWSLGCTIIEMLTGKPPWSEFPGHQAMFKVLHRSPDIPKNLSPEGQDFLEQCFRRNPAERPSAAMLLTHAFVQNLHDQDIIVHSQVCHKEDTIVHSQGYKEDTGSKDEPRKHSPGHSSKHSRGVVPASFRARIFCKIQNLIGDTSKKADTEESNHIRSSPLSPCSLTDVNSPQSPFNPNNRNCMTVTKPSNIPFTIMRIVKHL 698
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g04485 698 MobiDBLite consensus disorder prediction 270 284 - -
Trre5g04485 698 MobiDBLite consensus disorder prediction 641 673 - -
Trre5g04485 698 MobiDBLite consensus disorder prediction 48 78 - -
Trre5g04485 698 MobiDBLite consensus disorder prediction 1 91 - -
Trre5g04485 698 MobiDBLite consensus disorder prediction 650 673 - -
Trre5g04485 698 MobiDBLite consensus disorder prediction 593 618 - -
Trre5g04485 698 MobiDBLite consensus disorder prediction 216 296 - -
Trre5g04485 698 PANTHER MAP KINASE KINASE KINASE SSK2-RELATED-RELATED 12 577 - -
Trre5g04485 698 SUPERFAMILY Protein kinase-like (PK-like) 280 581 IPR011009 -
Trre5g04485 698 Pfam Protein kinase domain 307 566 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre5g04485 698 SMART serkin_6 306 567 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre5g04485 698 Gene3D Transferase(Phosphotransferase) domain 1 303 607 - -
Trre5g04485 698 MobiDBLite consensus disorder prediction 1 32 - -
Trre5g04485 698 ProSitePatterns Protein kinases ATP-binding region signature. 312 335 IPR017441 GO:0005524
Trre5g04485 698 MobiDBLite consensus disorder prediction 113 137 - -
Trre5g04485 698 FunFam Mitogen-activated protein kinase kinase kinase 5 303 604 - -
Trre5g04485 698 MobiDBLite consensus disorder prediction 593 609 - -
Trre5g04485 698 ProSiteProfiles Protein kinase domain profile. 306 567 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g04485 Trre-Chr5 46926098 46931895 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g04485 30 569 MAP Kinase Kinase Kinase AT5G66850 48.793 3.60e-147 442
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Trre5g04485 Pkinase 2.9e-66 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g04485 - - gmx:100781764 835.484