Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g04484 ATGACTCCTACTAACCAAGGTAAGGGACAATTTATTAAGCAGCCCAGTCTTACCAGACAGAGGAGTTCATGGTACCCTAACAACCAACACCAAGATGTTTCTCCTCAACCGGCGGCTTCTCCTCTTCGAGCTAGGTCCGGGCACTGGTCTCCTGATGTTTCTCCTCTGCCGCTTCCACTTCCGGAATGGCCGTTGTACCCACGACCCGATCATCATGCTGCCTTACTCTTTTCCGGAAACACGACGGATCATGATGCTGTGAAAAGTTTAAGGTCTTCCAACAGTTTGAGAAGACCCTCTCATGATCATTCCAACACAAAATGGCAATTTACTACCAAGAGTGCCCCAACAAGTATATTCTCCAGTCCTGTTACTAGTCCACATGGATTAAGCAGTGTAGATTTATCTGATCCTTCCACCAATTTTTCTCGAGATTTTAATGACATTTTGAGAAAGTATGCTAAAACTGCTCGTAGTCCAGACTTGTCTCCTCGTCGTAGCTTGGAGAACCACCGTCCTAACTACCGCCACACTATTCAAGATTTTAATGACATTTCGAGATTGCCTGCTAAAACGGCTCGTAGTCCAGACTTGTCTCCTCGTCGTAGCTTGGAGAACCACAGTCCTGACCACCGCGCCACTACTCAAGGGGGATCTCATTCTCACCAATCTAAATATGGCACCAGAGTGGAGCATGAAAATAACCATGTTGATGCATATCCATTGCCCCTTCCTCCGGGAGCTTCACTGCAACCACAACAATCACCTGCACAACGTCAAACAAATGTCTCATTGCATCACACAACCGAAAATTTTCATTCAATGAGGGGTCAATGGCAGAAAGGAAGACTTATTGGACAAGGATCATTAGGAAGTGTTTATATGGCAACAAACATAGAGACTGGAACCTCATGCGCAATGAAAGAGGTGGATCTGTTTCCTGATGATCCTAAATCTGCTGACTGCATAAATCAGCTACACCAGGAAATCAGAATTCATGGTCAACTACATCACCCCAACATTGTTGAATATTATGGCAGTGAAATAATTGGTGATCGATTGCGCATATATATGGAATATGTCCAACTTGGATCACTGAATAAGTTTATGCATGAACATTGTGGGGCTTTGACAGAATCTGTGGTTCGCAATTTTACGAGGCATATTCTCTCTGGATTGGCTTACTTACATAGTACCAAGACTATCCACAGGGACATTAAATGTGCAAACTTGCTGGTTGATGCATCTAGCATTGTCAAGCTTGCAGGTTTTAGGATGTCAAAAATTCTGACTAAGAAATCAAGTGAACTTTTGCTGAAAAAAAGTCCCTACTGGATGGCTCCAGAGTTCATGATGGTTGCCATGAAGAAAGCAACCAAACCCAACATTGCCATGGCTGTCGATATATGGTGCTTAGGATGCACCGTCATCGAAATGTTGACAGGAAAACCCCCTTGGGGCGAGTTTTCAGAGGTTCAAGCCACGTTCAAGGTACTGAACAGATCCCCAGACATACCGAAAACTTTATCTCCAGAAGGACATGATTTCCTTGAGCAGTGTTTCCAAAGGAATCCTTTAGATCGACCATCTGCAGCGATGCTTCTAACACATGCCTTTGTACAAATGAAGACACCGGACCCAAAGATGAATCGCGTAGACATAGTCCAGGAGGCGGCTCAATAA 1683 0.4433 MTPTNQGKGQFIKQPSLTRQRSSWYPNNQHQDVSPQPAASPLRARSGHWSPDVSPLPLPLPEWPLYPRPDHHAALLFSGNTTDHDAVKSLRSSNSLRRPSHDHSNTKWQFTTKSAPTSIFSSPVTSPHGLSSVDLSDPSTNFSRDFNDILRKYAKTARSPDLSPRRSLENHRPNYRHTIQDFNDISRLPAKTARSPDLSPRRSLENHSPDHRATTQGGSHSHQSKYGTRVEHENNHVDAYPLPLPPGASLQPQQSPAQRQTNVSLHHTTENFHSMRGQWQKGRLIGQGSLGSVYMATNIETGTSCAMKEVDLFPDDPKSADCINQLHQEIRIHGQLHHPNIVEYYGSEIIGDRLRIYMEYVQLGSLNKFMHEHCGALTESVVRNFTRHILSGLAYLHSTKTIHRDIKCANLLVDASSIVKLAGFRMSKILTKKSSELLLKKSPYWMAPEFMMVAMKKATKPNIAMAVDIWCLGCTVIEMLTGKPPWGEFSEVQATFKVLNRSPDIPKTLSPEGHDFLEQCFQRNPLDRPSAAMLLTHAFVQMKTPDPKMNRVDIVQEAAQ 560
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g04484 560 SMART serkin_6 279 540 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre5g04484 560 MobiDBLite consensus disorder prediction 156 262 - -
Trre5g04484 560 MobiDBLite consensus disorder prediction 105 138 - -
Trre5g04484 560 MobiDBLite consensus disorder prediction 210 224 - -
Trre5g04484 560 MobiDBLite consensus disorder prediction 1 51 - -
Trre5g04484 560 ProSiteProfiles Protein kinase domain profile. 279 540 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre5g04484 560 MobiDBLite consensus disorder prediction 1 36 - -
Trre5g04484 560 Pfam Protein kinase domain 280 539 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre5g04484 560 Gene3D Transferase(Phosphotransferase) domain 1 276 559 - -
Trre5g04484 560 MobiDBLite consensus disorder prediction 156 178 - -
Trre5g04484 560 MobiDBLite consensus disorder prediction 86 138 - -
Trre5g04484 560 PANTHER MAP KINASE KINASE KINASE SSK2-RELATED-RELATED 35 544 - -
Trre5g04484 560 SUPERFAMILY Protein kinase-like (PK-like) 263 545 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g04484 Trre-Chr5 46912351 46921711 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g04484 105 541 MAP Kinase Kinase Kinase AT5G66850 47.778 4.51e-130 394
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Trre5g04484 Pkinase 5.3e-57 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g04484 - - tpra:123916587 665.225