Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g04479 ATGATGAATATGAATATGAATTTTGAAGCAATGAATAGAAGCTCATCAACAACAACATCATCATCAGATTCATGTTCATCAGAATCAAATCCAACGAACCAAAACAAATTAGACAAAATCAAAGGTCCATGGAGTGCAGAAGAAGATAGAATCCTAACCCGACTCGTTGAACAACATGGAGCAAGAAATTGGTCACTCATAAGCCGTTACATAAAAGGAAGGTCCGGAAAATCCTGCAGACTCCGATGGTGTAATCAACTCAGTCCAACGGTGGAGCACCGTCCATTCTCGCCGGAAGAAGATGAAACAATCATAGCAGCGCATACTCAATACGGTAACCGTTGGGCTACCATTGCTCGTCTTTTACCTGGAAGAACTGATAATGCTGTGAAGAATCATTGGAATTCGACGCTTAAACGAAGAGCAGGTTGTGGCGGTGGTCGCGGAATTGTTAGCGGCGGAAGTTGTTCTGCTCCGTTGGTTCAACCTTGTTTGGCGTTTGAAGATGATCCGTTGACCGCGTTGACTCTTGCTCCTCCCGGGAATGTTAATGGTGGTTATTGTGTGGAAGATCGGGAAGAGGTGGTTGCTGATCGTCGGTTTCCTTCGCCGTCGCCGTCGCCGGAAAGTGTTCCGACGGGGTTTTGGGATGTGATGAGAGGTGTTATTGCAAAAGAAGTTAGGGAATATGTTTCTTCTAATTTTGCTCATAATAATAATTCTGGTTTTCATTAA 735 0.4408 MMNMNMNFEAMNRSSSTTTSSSDSCSSESNPTNQNKLDKIKGPWSAEEDRILTRLVEQHGARNWSLISRYIKGRSGKSCRLRWCNQLSPTVEHRPFSPEEDETIIAAHTQYGNRWATIARLLPGRTDNAVKNHWNSTLKRRAGCGGGRGIVSGGSCSAPLVQPCLAFEDDPLTALTLAPPGNVNGGYCVEDREEVVADRRFPSPSPSPESVPTGFWDVMRGVIAKEVREYVSSNFAHNNNSGFH 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g04479 244 MobiDBLite consensus disorder prediction 1 42 - -
Trre5g04479 244 CDD SANT 43 85 IPR001005 -
Trre5g04479 244 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 36 91 IPR017930 -
Trre5g04479 244 Gene3D - 40 92 - -
Trre5g04479 244 MobiDBLite consensus disorder prediction 1 39 - -
Trre5g04479 244 CDD SANT 95 138 IPR001005 -
Trre5g04479 244 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 93 142 IPR017930 -
Trre5g04479 244 ProSiteProfiles Myb-like domain profile. 36 87 IPR001005 -
Trre5g04479 244 FunFam MYB transcription factor 41 92 - -
Trre5g04479 244 Pfam Myb-like DNA-binding domain 44 102 - -
Trre5g04479 244 PANTHER MYB PROTEIN-RELATED 41 203 - -
Trre5g04479 244 Gene3D - 95 141 - -
Trre5g04479 244 ProSiteProfiles Myb-like domain profile. 88 138 IPR001005 -
Trre5g04479 244 SMART sant 40 89 IPR001005 -
Trre5g04479 244 SMART sant 92 140 IPR001005 -
Trre5g04479 244 SUPERFAMILY Homeodomain-like 38 134 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g04479 Trre-Chr5 46882688 46883422 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g04479 38 152 MYB Transcription Factor Family AT3G50060 73.043 1.83e-58 186
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Trre5g04479 Myb_DNA-bind_6 1.3e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g04479 - - vra:106761536 296.204