Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g04476 ATGACCGCCGCCGCCGAGAAGGTTGCCGGAAACATAGACTTGTTATGTGAGATCCTTATCCGGGTGCCGTTGCAATCCCTTCTCCGACTGAAGTGCGTCTCGAAGCAGTGGCTGACACTCATCTCCGACCAACAATTCCTTGAATCTCATTCCCTCCACCACCAACAACACCAACTCTACTCCAATTCCCTTATTTTCACCCACAAAGACCACCCAATACATATCCTCTCCCTCACCTCAACCCCAACCCCAACCAAATCCCACCGTGTTCTCAATTTGGATTTCCTCAATCAACCCGGAGTCACCGTGGTTCATTCTTGCAACGGCCTTCTCCTCTGCCGCCTCAAAAATAACACCACCACCTACTTCATCTGCAACCCAATTACCCAAAACTTCACCACTCTCGATTTGGGCAGCCACCCATGTAGAGACCACAAAAACAACAAAAGCAAGATCGAGCTTTATCTCGCTTTCGAACCCCCCATATCGCCCAGTCCCACCTATAAAGTCGTTTCAGTTGCTGCGCTCTATCCACCACATGACTGGCTGTTCCATGTATATACATTCAAAACCGGTTGCCGCATTGGCCCTGGGGTTTTTGTCTATTGCCCATTCCCATTGGATGCCGCTAATGGGGTTTACTGCAATGGTGGCATTCATTGGTGCAACCTAGGATATGAGTTTTCTGTGTATTTTGATATTCATGCTCAGCGTCTCAAAAATTATCCCATGCCCCATATTTTGGAATGTTTTCAAGACTGGTTTAGACAAGGTATGGCATATATTTATTATTTTGGAGAGTCTGGGGGACGTTTGCATTTAATGCTTCCTTCTTTAAAGGAAGATATGCCAAAGGGCCTGCTATTCGGCCATTCTAATCTTATTGATATTTTTGAGCTAAAGGAAGATTACTCCAAGTGGTCATTGATGCACCGTCTTGATCTTAAACCCATGCGAGTTAAATTTCCACAGATAACTTGGAAAGTCCATAGTTTGGGCTTTTGCATTGTTTGCACCCCAAAAGACAAGAAGAAATCATCTTTGTCGGTGTTGATCAAGAGGGACCTAGTTCAGGATCTCGTTCCACTAATTTGGCATTCTTTTGGTACCATTGCCGCACTTTTGGAGGAAATAGTTGCAGTATACCCTGTTCTTTCACCACCAAATCTTTCTCCAGCACAGTCAAACCGAGTATGCAATGCACTTGCTCTACTTCAGTGTGTGGCATCTCACCGTGATACAAAGACGCTATTCCTCAGCGCTCACTTACCTCTATATCTGTATCCCTTTTGGCTTACAAGTCTTGGTGTCATTGGTGCCTTGGTGAAGGAACTACACTACATCGTTGCTGAGTCCAGTGTTTGA 1365 0.4542 MTAAAEKVAGNIDLLCEILIRVPLQSLLRLKCVSKQWLTLISDQQFLESHSLHHQQHQLYSNSLIFTHKDHPIHILSLTSTPTPTKSHRVLNLDFLNQPGVTVVHSCNGLLLCRLKNNTTTYFICNPITQNFTTLDLGSHPCRDHKNNKSKIELYLAFEPPISPSPTYKVVSVAALYPPHDWLFHVYTFKTGCRIGPGVFVYCPFPLDAANGVYCNGGIHWCNLGYEFSVYFDIHAQRLKNYPMPHILECFQDWFRQGMAYIYYFGESGGRLHLMLPSLKEDMPKGLLFGHSNLIDIFELKEDYSKWSLMHRLDLKPMRVKFPQITWKVHSLGFCIVCTPKDKKKSSLSVLIKRDLVQDLVPLIWHSFGTIAALLEEIVAVYPVLSPPNLSPAQSNRVCNALALLQCVASHRDTKTLFLSAHLPLYLYPFWLTSLGVIGALVKELHYIVAESSV 454
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g04476 454 Pfam F-box domain 13 45 IPR001810 GO:0005515
Trre5g04476 454 SMART fbox_2 10 50 IPR001810 GO:0005515
Trre5g04476 454 Gene3D - 11 49 - -
Trre5g04476 454 SUPERFAMILY F-box domain 13 63 IPR036047 GO:0005515
Trre5g04476 454 Pfam Cell differentiation family, Rcd1-like 341 444 - -
Trre5g04476 454 CDD F-box_AtFBW1-like 13 46 - -
Trre5g04476 454 PANTHER UNCHARACTERIZED 338 444 IPR007216 GO:0006402|GO:0030014
Trre5g04476 454 Gene3D - 334 452 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g04476 Trre-Chr5 46716428 46720141 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Rcd1-like Trre5g04476 Rcd1 1e-34 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g04476 K12606 - lja:Lj1g3v3381230.1 275.789