Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Trre5g04459 | ATGCAATCATCAAACGGTGGTAATAATTCTGATTCAAAACCAACTGAACAGAGATTAAACAAAACGCCGCCGCATTCAGTTACTTTACCACCACATCAACAGTGGATTCCGATGCAATATCCAGCGGCGGCAATGGTAATGCCACATCATATGTTACCACCTCAACATTATGCGCCGCCACCGCATCATTATATGCCTTATCATTATCATCAACAACAACAACAACACGTGCCTCACGTGCATCATGGATCTAGTGCTGCTGATAATAAGACTATTTGGGTCGGTGATTTGCATCATTGGATGGATGAGAATTATCTTCACCGTTGTTTCGCTTCCACCGGCGAGATTTGCTCGATTAAGGTTATTCGGAATAAGCAGACTGGTCAAACGGAGGGTTATGGATTTGTGGAATTCCATTCGCATGGGACAGCTGAGAAAGTTTTGCAGAATTATGCTGGGATGTTGATGCCTAACACAGAGCAACTTTTCCGCCTTAACTGGGCGACATTTAGCACAGGAGATCACAAACGCTCAGATAATGTCCCTGATCTTTCAATTTTTGTAGGAGATTTAGCTGCAGATGTTACCGATAGCATGTTGCTTGAAACTTTTTCTAGTAGATATCCTTCTGTTAAAGCTGCTAAAGTTGTTTTTGATGCCAATACCGGTCGTTCAAAGGGTTATGGTTTCGTCAGGTTTGGAGATGATAACGAGAGGTCAAAAGCTATGAATGAAATGAATGGTGTTTACTGTTCTAGTAGGCCTATGCGAATTGGTGCTGCAACTCCTAGGAAATCCTCTGGCTATCAACAAGGAGGCCAGTCAAATGGCACACCAAGCCAATCTGAAGCTGATTCTACAAATACAACTATATTTGTGGGAGGACTTGACCCTAGTGCTACTGCTGAAGATCTCAGACAACCATTCTCCCAGTATGGTGAGATAATGTCTGTTAAGATCCCTGTCGGAAAAGGATGTGGTTTTGTACAATTTGGCAACAGAAATAACGCTGAAGAGGCATTGCAGAAGCTAAATGGTACAACAATTGGCAAGCAAACAGTCCGTCTTTCTTGGGGTCGCAATCCGGCAAATAAGCAGTTTAGGACGGATTTCGGCAGTCCTTGGAATTCTCCGGCGTATTATGGAGGAGCTGTTTATGATGGGTATGGATATGCTTTACCGCATCCTCATGACCCGAGCATGTATGCTGCTGCTTATGGGGCTTACCCCATTTATGGAGGACACCAACAACAAGTAAGCTAA | 1263 | 0.4355 | MQSSNGGNNSDSKPTEQRLNKTPPHSVTLPPHQQWIPMQYPAAAMVMPHHMLPPQHYAPPPHHYMPYHYHQQQQQHVPHVHHGSSAADNKTIWVGDLHHWMDENYLHRCFASTGEICSIKVIRNKQTGQTEGYGFVEFHSHGTAEKVLQNYAGMLMPNTEQLFRLNWATFSTGDHKRSDNVPDLSIFVGDLAADVTDSMLLETFSSRYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSKAMNEMNGVYCSSRPMRIGAATPRKSSGYQQGGQSNGTPSQSEADSTNTTIFVGGLDPSATAEDLRQPFSQYGEIMSVKIPVGKGCGFVQFGNRNNAEEALQKLNGTTIGKQTVRLSWGRNPANKQFRTDFGSPWNSPAYYGGAVYDGYGYALPHPHDPSMYAAAYGAYPIYGGHQQQVS | 420 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Trre5g04459 | 420 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 90 | 170 | IPR000504 | GO:0003723 | |
Trre5g04459 | 420 | SMART | rrm1_1 | 185 | 259 | IPR000504 | GO:0003723 | |
Trre5g04459 | 420 | SMART | rrm1_1 | 91 | 166 | IPR000504 | GO:0003723 | |
Trre5g04459 | 420 | SMART | rrm1_1 | 290 | 357 | IPR000504 | GO:0003723 | |
Trre5g04459 | 420 | FunFam | Polyadenylate-binding protein RBP47B | 171 | 274 | - | - | |
Trre5g04459 | 420 | CDD | RRM2_SECp43_like | 183 | 262 | - | - | |
Trre5g04459 | 420 | Gene3D | - | 89 | 169 | IPR012677 | - | |
Trre5g04459 | 420 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 184 | 263 | IPR000504 | GO:0003723 | |
Trre5g04459 | 420 | PANTHER | TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED | 79 | 365 | - | - | |
Trre5g04459 | 420 | MobiDBLite | consensus disorder prediction | 1 | 32 | - | - | |
Trre5g04459 | 420 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 92 | 160 | IPR000504 | GO:0003723 | |
Trre5g04459 | 420 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 186 | 255 | IPR000504 | GO:0003723 | |
Trre5g04459 | 420 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 291 | 354 | IPR000504 | GO:0003723 | |
Trre5g04459 | 420 | SUPERFAMILY | RNA-binding domain, RBD | 51 | 170 | IPR035979 | GO:0003676 | |
Trre5g04459 | 420 | FunFam | Polyadenylate-binding protein RBP47 | 275 | 392 | - | - | |
Trre5g04459 | 420 | Gene3D | - | 183 | 259 | IPR012677 | - | |
Trre5g04459 | 420 | MobiDBLite | consensus disorder prediction | 260 | 291 | - | - | |
Trre5g04459 | 420 | SUPERFAMILY | RNA-binding domain, RBD | 183 | 362 | IPR035979 | GO:0003676 | |
Trre5g04459 | 420 | Gene3D | - | 268 | 368 | IPR012677 | - | |
Trre5g04459 | 420 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 289 | 361 | IPR000504 | GO:0003723 | |
Trre5g04459 | 420 | FunFam | Polyadenylate-binding protein RBP47B | 89 | 169 | - | - | |
Trre5g04459 | 420 | MobiDBLite | consensus disorder prediction | 264 | 291 | - | - | |
Trre5g04459 | 420 | CDD | RRM1_SECp43_like | 91 | 171 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Trre5g04459 | Trre-Chr5 | 46600411 | 46603439 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Trre5g04459 | 92 | 366 | Eukaryotic Initiation Factors Gene Family | AT1G71770 | 27.305 | 1.25e-28 | 116 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Trre5g04459 | - | - | gmx:100785454 | 655.21 |