Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g04459 ATGCAATCATCAAACGGTGGTAATAATTCTGATTCAAAACCAACTGAACAGAGATTAAACAAAACGCCGCCGCATTCAGTTACTTTACCACCACATCAACAGTGGATTCCGATGCAATATCCAGCGGCGGCAATGGTAATGCCACATCATATGTTACCACCTCAACATTATGCGCCGCCACCGCATCATTATATGCCTTATCATTATCATCAACAACAACAACAACACGTGCCTCACGTGCATCATGGATCTAGTGCTGCTGATAATAAGACTATTTGGGTCGGTGATTTGCATCATTGGATGGATGAGAATTATCTTCACCGTTGTTTCGCTTCCACCGGCGAGATTTGCTCGATTAAGGTTATTCGGAATAAGCAGACTGGTCAAACGGAGGGTTATGGATTTGTGGAATTCCATTCGCATGGGACAGCTGAGAAAGTTTTGCAGAATTATGCTGGGATGTTGATGCCTAACACAGAGCAACTTTTCCGCCTTAACTGGGCGACATTTAGCACAGGAGATCACAAACGCTCAGATAATGTCCCTGATCTTTCAATTTTTGTAGGAGATTTAGCTGCAGATGTTACCGATAGCATGTTGCTTGAAACTTTTTCTAGTAGATATCCTTCTGTTAAAGCTGCTAAAGTTGTTTTTGATGCCAATACCGGTCGTTCAAAGGGTTATGGTTTCGTCAGGTTTGGAGATGATAACGAGAGGTCAAAAGCTATGAATGAAATGAATGGTGTTTACTGTTCTAGTAGGCCTATGCGAATTGGTGCTGCAACTCCTAGGAAATCCTCTGGCTATCAACAAGGAGGCCAGTCAAATGGCACACCAAGCCAATCTGAAGCTGATTCTACAAATACAACTATATTTGTGGGAGGACTTGACCCTAGTGCTACTGCTGAAGATCTCAGACAACCATTCTCCCAGTATGGTGAGATAATGTCTGTTAAGATCCCTGTCGGAAAAGGATGTGGTTTTGTACAATTTGGCAACAGAAATAACGCTGAAGAGGCATTGCAGAAGCTAAATGGTACAACAATTGGCAAGCAAACAGTCCGTCTTTCTTGGGGTCGCAATCCGGCAAATAAGCAGTTTAGGACGGATTTCGGCAGTCCTTGGAATTCTCCGGCGTATTATGGAGGAGCTGTTTATGATGGGTATGGATATGCTTTACCGCATCCTCATGACCCGAGCATGTATGCTGCTGCTTATGGGGCTTACCCCATTTATGGAGGACACCAACAACAAGTAAGCTAA 1263 0.4355 MQSSNGGNNSDSKPTEQRLNKTPPHSVTLPPHQQWIPMQYPAAAMVMPHHMLPPQHYAPPPHHYMPYHYHQQQQQHVPHVHHGSSAADNKTIWVGDLHHWMDENYLHRCFASTGEICSIKVIRNKQTGQTEGYGFVEFHSHGTAEKVLQNYAGMLMPNTEQLFRLNWATFSTGDHKRSDNVPDLSIFVGDLAADVTDSMLLETFSSRYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSKAMNEMNGVYCSSRPMRIGAATPRKSSGYQQGGQSNGTPSQSEADSTNTTIFVGGLDPSATAEDLRQPFSQYGEIMSVKIPVGKGCGFVQFGNRNNAEEALQKLNGTTIGKQTVRLSWGRNPANKQFRTDFGSPWNSPAYYGGAVYDGYGYALPHPHDPSMYAAAYGAYPIYGGHQQQVS 420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g04459 420 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 90 170 IPR000504 GO:0003723
Trre5g04459 420 SMART rrm1_1 185 259 IPR000504 GO:0003723
Trre5g04459 420 SMART rrm1_1 91 166 IPR000504 GO:0003723
Trre5g04459 420 SMART rrm1_1 290 357 IPR000504 GO:0003723
Trre5g04459 420 FunFam Polyadenylate-binding protein RBP47B 171 274 - -
Trre5g04459 420 CDD RRM2_SECp43_like 183 262 - -
Trre5g04459 420 Gene3D - 89 169 IPR012677 -
Trre5g04459 420 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 184 263 IPR000504 GO:0003723
Trre5g04459 420 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 79 365 - -
Trre5g04459 420 MobiDBLite consensus disorder prediction 1 32 - -
Trre5g04459 420 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 92 160 IPR000504 GO:0003723
Trre5g04459 420 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 186 255 IPR000504 GO:0003723
Trre5g04459 420 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 291 354 IPR000504 GO:0003723
Trre5g04459 420 SUPERFAMILY RNA-binding domain, RBD 51 170 IPR035979 GO:0003676
Trre5g04459 420 FunFam Polyadenylate-binding protein RBP47 275 392 - -
Trre5g04459 420 Gene3D - 183 259 IPR012677 -
Trre5g04459 420 MobiDBLite consensus disorder prediction 260 291 - -
Trre5g04459 420 SUPERFAMILY RNA-binding domain, RBD 183 362 IPR035979 GO:0003676
Trre5g04459 420 Gene3D - 268 368 IPR012677 -
Trre5g04459 420 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 289 361 IPR000504 GO:0003723
Trre5g04459 420 FunFam Polyadenylate-binding protein RBP47B 89 169 - -
Trre5g04459 420 MobiDBLite consensus disorder prediction 264 291 - -
Trre5g04459 420 CDD RRM1_SECp43_like 91 171 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g04459 Trre-Chr5 46600411 46603439 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g04459 92 366 Eukaryotic Initiation Factors Gene Family AT1G71770 27.305 1.25e-28 116
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g04459 - - gmx:100785454 655.21