Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g04443 ATGGTTGATAAATGGTGGGAATTTGTTTGTCCTTCTGATAAAGGAAATGATGATCCTTTGATTAATCCATTTGTGGAAGAAGCTCCTGATCTTGAAGAAGTCGGCGTTGAAAAAGTGCTTATTACTGTTTGTGAGAAAGATATATTAAGGGAAAGAGGGAAACTTTATCATAAGAAATTGGTAAACAGTGGTTGGAAAGGTACTGCTGAGTTTTATGAAACTCAAGAGGAAGATCATGTGTTTCATATTTTTAATCCAGATTGTGATAAAGCTAAGAATTTGATTAAACGCATAGCTGATTTCATCAATGAATAA 315 0.3333 MVDKWWEFVCPSDKGNDDPLINPFVEEAPDLEEVGVEKVLITVCEKDILRERGKLYHKKLVNSGWKGTAEFYETQEEDHVFHIFNPDCDKAKNLIKRIADFINE 104
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g04443 104 Gene3D alpha/beta hydrolase 1 104 IPR029058 -
Trre5g04443 104 PANTHER ARYLACETAMIDE DEACETYLASE 4 89 - -
Trre5g04443 104 SUPERFAMILY alpha/beta-Hydrolases 2 104 IPR029058 -
Trre5g04443 104 Pfam alpha/beta hydrolase fold 2 82 IPR013094 GO:0016787
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g04443 Trre-Chr5 46500354 46500668 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g04443 2 102 Carbohydrate Esterase AT3G48690 43.137 1.24e-19 79.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g04443 - - var:108341277 189.119