Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g04440 ATGGTGGCGGCAGCAGCATCATCATCATACGAAGAAAGTCGCCGGAAAAGAATGGAAGAAAACAGAAAGAGAATGGAAGCTCTCAATCTTCATCAACTTTCTCATTCTCTTCACAAATCATCTTCCCCCGTTTCAAAACCCTCCCCTTCCAAACCTCGTACCATCACCAAAGAGCTTGTCGTTGTTCGACGCTCCGGCCGTGTCGCCAATTTACCCGCTCCCATTTACAAAGAAGTTCTTATTGATCGTGTCACAATACCTAGAAATCGAACTTCAAGAGGAGGCTATAATATGTATAGGGATTATTCGAAGCGTGTGTATGCTTCTGATGAAGCTCGAGAGAAAGCATTGGAAAAGGCGGAAAAGTTGCAATCTGATTTAGATTCCGATCATCCGATTTTTATTAAGACAATGCTTCAATCTCATGTTACTGGTGGATTCTGGCTGGGCCTTCCAGTTCATTTCTGCAAGCAATACCTTCCAAAACGGGATGAAGCTATGACTTTGATCGATGAGGATGGGGAGGAGTATCCAACTACATATTTGGCTCAAAAAACAGGACTTAGTGCTGGATGGAGAGGTTTTTCTATTGCTCATAACCTTGTTGATGGGGACGCTTTAATTTTTGAATTAGTTAAACGCACTGCATTCAAGGTGTACATTATTAGAGTGAACGGTCCTTCGGAGAGTAAAGAGCTCGAGTGA 705 0.4284 MVAAAASSSYEESRRKRMEENRKRMEALNLHQLSHSLHKSSSPVSKPSPSKPRTITKELVVVRRSGRVANLPAPIYKEVLIDRVTIPRNRTSRGGYNMYRDYSKRVYASDEAREKALEKAEKLQSDLDSDHPIFIKTMLQSHVTGGFWLGLPVHFCKQYLPKRDEAMTLIDEDGEEYPTTYLAQKTGLSAGWRGFSIAHNLVDGDALIFELVKRTAFKVYIIRVNGPSESKELE 234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g04440 234 Gene3D - 108 226 IPR015300 -
Trre5g04440 234 MobiDBLite consensus disorder prediction 1 53 - -
Trre5g04440 234 SUPERFAMILY DNA-binding pseudobarrel domain 127 225 IPR015300 -
Trre5g04440 234 MobiDBLite consensus disorder prediction 33 52 - -
Trre5g04440 234 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 25 227 IPR044837 -
Trre5g04440 234 ProSiteProfiles B3 DNA-binding domain profile. 134 225 IPR003340 GO:0003677
Trre5g04440 234 SMART B3_2 134 225 IPR003340 GO:0003677
Trre5g04440 234 MobiDBLite consensus disorder prediction 10 29 - -
Trre5g04440 234 CDD B3_DNA 132 223 IPR003340 GO:0003677
Trre5g04440 234 Pfam B3 DNA binding domain 134 223 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g04440 Trre-Chr5 46484083 46487324 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g04440 9 225 B3 DNA Binding Superfamily AT3G19184 57.919 2.31e-74 225
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Trre5g04440 B3 7.4e-15 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g04440 - - gmx:100797091 290.426
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g04440 5 46484083 46487324 Trre5g04440 5 46484083 46487324 ECH