Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g04431 ATGAACAAGGCACGCTTTGGGTTTTTCTTCATTTTGCTCGTTCTCTTTGCTTCACAGATGGTGGTAAAAACTGAGGGAAGGCACTGTGAATCAAAGAGCCATAGGTTTAAAGGAATGTGTTTGAGTGATCACAATTGCGCTTCAGTTTGTCATGTTGAAGGTTTTCCAGGTGGTAATTGCAGGGGATTTCGGAGACGCTGCTTCTGCAAAAAGCGTTGTTAA 222 0.4279 MNKARFGFFFILLVLFASQMVVKTEGRHCESKSHRFKGMCLSDHNCASVCHVEGFPGGNCRGFRRRCFCKKRC 73
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g04431 73 Gene3D - 27 73 IPR036574 -
Trre5g04431 73 PANTHER DEFENSIN-LIKE PROTEIN 1 6 73 - -
Trre5g04431 73 SMART gth_4 28 73 IPR003614 GO:0006952
Trre5g04431 73 SUPERFAMILY Scorpion toxin-like 27 73 IPR036574 -
Trre5g04431 73 CDD Knot1 40 69 IPR003614 GO:0006952
Trre5g04431 73 Pfam Gamma-thionin family 27 73 - -
Trre5g04431 73 ProSitePatterns Gamma-thionins family signature. 27 50 IPR008176 GO:0006952
Trre5g04431 73 PRINTS Purothionin signature 28 43 IPR008176 GO:0006952
Trre5g04431 73 PRINTS Purothionin signature 58 72 IPR008176 GO:0006952
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g04431 Trre-Chr5 46434744 46435055 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g04431 1 73 Plant Defensins Gene Families AT5G63660 58.904 6.88e-26 89.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g04431 - - gmx:100788332 102.834