Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g04428 ATGGACAAGTACGAGGCTGTTAAAGATTTGGGTTCTGGCAATTTTGGTGTTGCTAGGCTTATGAGAAACAAAGTTACAAAGGAACTTGTCGCCATGAAATACATCGAACGTGGTCACAAGATTGATGAGAACGTTGCAAGGGAGATCATGAATCATAGGTCTCTTCGGCATCCGAATATAATTCGGTTTAAGGAGGTGATTTTGACTCCGACACATTTAGCAATAGTTATGGAGTATGCAGCTGGAGGAGAGCTATTTGAGAGGATATGCAATGCTGGCAGATTCAGTGAAGATGAGGCCAGGTACTTCTTTCAGCAGCTGATCTCAGGTGTCCATTTCTGTCATACCATGCAAATATGCCACAGAGATCTGAAGCTAGAAAATACCCTTTTAGATGGAAGTCCTGCACCCCGCTTAAAAATCTGTGACTTTGGTTATTCAAAGTCATCTTTGCTCCATTCACGGCCCAAATCAACTGTTGGAACACCGGCGTATATAGCACCAGAGGTTCTTTCTAGGCGCGAGTATGATGGAAAGATGGCTGATGTTTGGTCATGTGGGGTGACTCTTTATGTCATGCTGGTTGGAGCATATCCCTTTGAAGATCAGGATGATCCTAAAAATTTTAGGAAAACAATCCAGCGTATCATGGCCATTCAATACAAAATTCCTGATTATGTTCACATATCTCAAGATTGTAGACACCTTATCTCTCGTATATTTGTTGCAAATCCATTGAGGAGAATCTCTATTAAGGACATCAAGAGCCATCCATGGTTTTTAAAGAATCTCCCAAGGGAGCTAACAGAATCAGCTCAAGCTATGTATTACCAGAGAGAAAATCCAAGCTTTCATCTACAAAGTGTGGACGACGTAATGAAAATCGTTGGAGAGGCAAGAAACCCGCCTCCAGTATCTAGGCCCGTCAAAGGCTTTGGCTGGGATGGAGAAGAAGATGAAGAGGCAGAAGAGTTGGAAGCAGAATTGGAGGAAGAGGATGATGAAGAAGATGAGTATGATAAAAGGGTCAAAGAGGTTCATGCAAGTGGAGAATTCCATATTAGTTAA 1068 0.4213 MDKYEAVKDLGSGNFGVARLMRNKVTKELVAMKYIERGHKIDENVAREIMNHRSLRHPNIIRFKEVILTPTHLAIVMEYAAGGELFERICNAGRFSEDEARYFFQQLISGVHFCHTMQICHRDLKLENTLLDGSPAPRLKICDFGYSKSSLLHSRPKSTVGTPAYIAPEVLSRREYDGKMADVWSCGVTLYVMLVGAYPFEDQDDPKNFRKTIQRIMAIQYKIPDYVHISQDCRHLISRIFVANPLRRISIKDIKSHPWFLKNLPRELTESAQAMYYQRENPSFHLQSVDDVMKIVGEARNPPPVSRPVKGFGWDGEEDEEAEELEAELEEEDDEEDEYDKRVKEVHASGEFHIS 355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g04428 355 FunFam Serine/threonine-protein kinase SRK2A 80 268 - -
Trre5g04428 355 PANTHER SERINE/THREONINE KINASE 3 301 - -
Trre5g04428 355 SUPERFAMILY Protein kinase-like (PK-like) 1 295 IPR011009 -
Trre5g04428 355 Gene3D Transferase(Phosphotransferase) domain 1 80 267 - -
Trre5g04428 355 ProSitePatterns Protein kinases ATP-binding region signature. 10 33 IPR017441 GO:0005524
Trre5g04428 355 MobiDBLite consensus disorder prediction 316 339 - -
Trre5g04428 355 FunFam Serine/threonine-protein kinase SRK2E 1 79 - -
Trre5g04428 355 MobiDBLite consensus disorder prediction 304 355 - -
Trre5g04428 355 SMART serkin_6 4 260 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre5g04428 355 ProSitePatterns Serine/Threonine protein kinases active-site signature. 119 131 IPR008271 GO:0004672|GO:0006468
Trre5g04428 355 MobiDBLite consensus disorder prediction 340 355 - -
Trre5g04428 355 Pfam Protein kinase domain 4 260 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre5g04428 355 ProSiteProfiles Protein kinase domain profile. 4 260 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre5g04428 355 CDD STKc_SnRK2 3 259 - -
Trre5g04428 355 Gene3D Phosphorylase Kinase; domain 1 1 79 - -
Trre5g04428 355 Coils Coil 315 342 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g04428 Trre-Chr5 46288606 46291634 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g04428 3 263 CBL-interacting serine-threonine protein kinases AT2G26980 41.544 5.07e-66 213
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_OST1L Trre5g04428 Pkinase 2.6e-70 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g04428 K14498 - gmx:547968 644.81