Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g04423 ATGGCCGCGGAAATTTGTGGCGGGTCTCTATTCTTATCCGTTAAAACTCAACTACAACGCCAACGGTTATTCCACCATTCTCAACAAACCGCCACTAGATTCAACTCATCCAAACCTCGCTTCTCTTTTCGCTCTTCAAATTCCTCCATCTTTCACCGCCGTGGCTCTTCCTCCGTTTTCTGCCGTGTTGCAAGCACCGATACACTCTCCGACTTTGATTCCACCGCTAAAGATGGACAGGATCGTCTCTCTAAGGTGCCTGTGTTGAATATAAGGAATTTCTCCATCATTGCTCATATTGACCATGGAAAATCCACGTTAGCGGATAAATTGCTTCAGGTTACTGGTACTGTTCCCCAGCGAGAGATGAAGGAACAATTTCTTGATAACATGGATTTAGAGAGAGAAAGAGGCATCACTATTAAGCTTCAGGCAGCTCGAATGCGTTATGTGTTTGAAAATAAACCATATTGTCTAAATTTAATAGATACTCCTGGACACGTCGACTTCTCGTACGAGGTTTCTCGATCACTTGCAGCATGTGAGGGTGCTCTCCTTGTAGTAGATGCTTCTCAGGGGGTTGAAGCACAAACACTAGCTAATGTTTATTTAGCTTTGGATAACAACCTAGAAATTATCCCTGTTTTGAACAAAATAGATCTTCCGGGTGCAGAACCAGATCGAGTTATCAAGGAGATTGAAGAGGTTATAGGTCTAGATTGTAGCAATGCCATTCTCTGCTCTGCAAAGGAAGGAATCGGTATAATGGATATTCTGAATGCAATTGTTGCAAGAATTCCCCCACCTCCTGATACATCAAAAAGGCCATTGAGGGCTTTAATATTTGATAGTTACTATGATCCATATAGAGGTGTTATTGTATATTTTCGAGTTGTAGATGGAACTATAAAGAAAGGCGACAGAGTTTATTTTATGGCTAGTGGTAAGGATTATTTTGCCGATGAAATTGGAGTTTTGTCTCCTAATCAACTTCAAGCTGAAGAGTTGTATGCTGGTGAGGTGGGCTATCTATCTGCATCAATAAGAACAGTAGCTGATGCCAGAGTGGGTGACACGATCACTCACCATTTTAGAAAGGCAGACAATTCACTCCCTGGATATGAGGAAGCCACTCCTATGGTGTTCTGTGGCTTATTTCCTGTTGATGCTGACCAATTTGCTGAGCTACGAGATGCACTTGAGAAGCTTCAACTCAATGATGCTGCACTGAAGTTTGAACCTGAGACCTCAAGTGCTATGGGATTTGGCTTTAGATGTGGGTTTTTGGGTCTTCTCCACATGGAAATTGTTCAGGAGAGACTTGAGAGAGAATACAATTTGAGCCTGATAACTACAGCTCCAAGTGTTGTATACAGAGTGAACTGTGTTAATGGCGATACTGTTGAATGCTCAAATCCATCTTTACTTCCTGAGCCGGGTAGGAGAAAATCAATTGAGGAGCCAGTTGTTAAGATTGAGATGCTTACACCAAAGGACTATATTGGTCCGCTTATGGAACTGGCTCAAGAAAGAAGAGGGCAGTTCAAAGAAATGAAATTTATCACTGAAATTAGGGCATCACTCACCTATGAATTACCACTAGCTGAGATGGTTGGTGATTTCTTTGACCAGTTAAAGTCAAGAAGTAAGGGTTATGCTAGTATGGAGTATACCGTTATCGGTTACAAAGAAAGTGATTTAACTAAACTCGACATACAGATAAATGGTGAATGTGTGGAGCCATTAGCTACGATTGTGCATAGAGATAAGGCATACTCTGTGGGAAGGGCTTTGACTCTAAAGTTGAAGGAGCTCATACCACGACAAATGTTTAAAATACCAATTCAAGCATGCTTAGGCGCCAAAGTGATTGCTAGCGAATCTTTATCCGCAATAAGGAAGGATGTATTAGCCAAATGTTACGGTGGAGACATTACGAGAAAAAAGAAACTGCTTAAGAAACAGGCTGAAGGAAAGAAAAGAATGAAATCAATTGGTAAAGTTGATGTGCCTCAAGAAGCTTTTATGGCAGTTTTGAAACTTGAGAAGGAGGTAATCTGA 2061 0.4129 MAAEICGGSLFLSVKTQLQRQRLFHHSQQTATRFNSSKPRFSFRSSNSSIFHRRGSSSVFCRVASTDTLSDFDSTAKDGQDRLSKVPVLNIRNFSIIAHIDHGKSTLADKLLQVTGTVPQREMKEQFLDNMDLERERGITIKLQAARMRYVFENKPYCLNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALDNNLEIIPVLNKIDLPGAEPDRVIKEIEEVIGLDCSNAILCSAKEGIGIMDILNAIVARIPPPPDTSKRPLRALIFDSYYDPYRGVIVYFRVVDGTIKKGDRVYFMASGKDYFADEIGVLSPNQLQAEELYAGEVGYLSASIRTVADARVGDTITHHFRKADNSLPGYEEATPMVFCGLFPVDADQFAELRDALEKLQLNDAALKFEPETSSAMGFGFRCGFLGLLHMEIVQERLEREYNLSLITTAPSVVYRVNCVNGDTVECSNPSLLPEPGRRKSIEEPVVKIEMLTPKDYIGPLMELAQERRGQFKEMKFITEIRASLTYELPLAEMVGDFFDQLKSRSKGYASMEYTVIGYKESDLTKLDIQINGECVEPLATIVHRDKAYSVGRALTLKLKELIPRQMFKIPIQACLGAKVIASESLSAIRKDVLAKCYGGDITRKKKLLKKQAEGKKRMKSIGKVDVPQEAFMAVLKLEKEVI 686
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g04423 686 Pfam Elongation factor Tu domain 2 291 361 IPR004161 GO:0005525
Trre5g04423 686 FunFam Elongation factor 4 88 271 - -
Trre5g04423 686 Pfam Elongation factor G C-terminus 485 571 IPR000640 -
Trre5g04423 686 Pfam GTP-binding protein LepA C-terminus 574 680 IPR013842 -
Trre5g04423 686 PANTHER TRANSLATION FACTOR GUF1-RELATED 70 681 IPR006297 GO:0005525
Trre5g04423 686 SUPERFAMILY EF-G C-terminal domain-like 485 579 IPR035647 -
Trre5g04423 686 PRINTS GTP-binding elongation factor signature 136 144 IPR000795 GO:0003924|GO:0005525
Trre5g04423 686 PRINTS GTP-binding elongation factor signature 93 106 IPR000795 GO:0003924|GO:0005525
Trre5g04423 686 PRINTS GTP-binding elongation factor signature 212 221 IPR000795 GO:0003924|GO:0005525
Trre5g04423 686 PRINTS GTP-binding elongation factor signature 160 170 IPR000795 GO:0003924|GO:0005525
Trre5g04423 686 PRINTS GTP-binding elongation factor signature 176 187 IPR000795 GO:0003924|GO:0005525
Trre5g04423 686 Gene3D Translation factors 272 371 - -
Trre5g04423 686 FunFam Translation factor GUF1, mitochondrial 372 453 - -
Trre5g04423 686 SUPERFAMILY Translation proteins 251 364 IPR009000 -
Trre5g04423 686 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 87 287 IPR027417 -
Trre5g04423 686 Gene3D - 566 640 IPR038363 -
Trre5g04423 686 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 89 270 IPR000795 GO:0003924|GO:0005525
Trre5g04423 686 FunFam Translation factor GUF1, mitochondrial 454 564 - -
Trre5g04423 686 FunFam Translation factor GUF1, mitochondrial 566 640 - -
Trre5g04423 686 CDD EF4_II 277 362 - -
Trre5g04423 686 SMART EFG_C_a 484 570 IPR000640 -
Trre5g04423 686 Hamap Elongation factor 4 [lepA]. 86 684 IPR006297 GO:0005525
Trre5g04423 686 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 129 144 IPR031157 -
Trre5g04423 686 Gene3D - 89 270 IPR027417 -
Trre5g04423 686 Gene3D - 454 565 - -
Trre5g04423 686 Pfam Elongation factor Tu GTP binding domain 90 267 IPR000795 GO:0003924|GO:0005525
Trre5g04423 686 CDD EF4_III 379 454 - -
Trre5g04423 686 FunFam Translation factor GUF1, mitochondrial 272 370 - -
Trre5g04423 686 NCBIfam small GTP-binding protein domain 92 260 IPR005225 GO:0005525
Trre5g04423 686 Gene3D Elongation Factor G (Translational Gtpase), domain 3 372 453 - -
Trre5g04423 686 CDD lepA_C 487 566 IPR035654 -
Trre5g04423 686 Hamap Translation factor GUF1 homolog, organellar chromatophore [lepA]. 83 683 IPR027518 -
Trre5g04423 686 CDD LepA 92 269 - -
Trre5g04423 686 SUPERFAMILY EF-G C-terminal domain-like 378 456 IPR035647 -
Trre5g04423 686 NCBIfam translation elongation factor 4 90 681 IPR006297 GO:0005525
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g04423 Trre-Chr5 46248874 46259196 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g04423 91 324 Eukaryotic Initiation Factors Gene Family AT3G22980 34.008 5.50e-26 112
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g04423 K21594 - gmx:100784073 1174.84
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g04423 5 46248874 46259196 Trre5g04423 5 46248874 46259196 ECH