Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g04411 ATGATGATGCAGGAGGACAAGAAAATGAAAGTGAAGAAAGGATGGCTTGCAGTTCAAGTGGGTTTAGAGAAAGAACAAGAAGGTGGTTCTGCATCTCAAAAATTTGTCATACCTATCTCTTATCTTTACCATCCACTTTTCAAGAATCTTCTTGACCAAGCTTATGATGTTTATGGCTACCACACTAATGGTCCTCTCAAACTTCCTTGTTCTGTTGATGATTTCCTTCATCTCCGTTGGCGAATCGAGAAAGAATCAGGTCCTAATCAACATAAGCATAACCATCATCAGAATCGTCTTCCACATGCTCTGATTTTTCACTCTTGTTGA 330 0.3909 MMMQEDKKMKVKKGWLAVQVGLEKEQEGGSASQKFVIPISYLYHPLFKNLLDQAYDVYGYHTNGPLKLPCSVDDFLHLRWRIEKESGPNQHKHNHHQNRLPHALIFHSC 109
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g04411 109 Pfam Auxin responsive protein 7 81 IPR003676 GO:0009733
Trre5g04411 109 PANTHER AUXIN-INDUCED PROTEIN-LIKE-RELATED 7 78 IPR003676 GO:0009733
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g04411 Trre-Chr5 46153341 46153670 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g04411 11 83 Calmodulin-binding Proteins AT3G43120 42.466 4.15e-12 57.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g04411 K14488 - mtr:25489869 214.542