Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g04410 ATGAACAAGACATACTTTGGGTTTTTCTTCTTGCTTCTCCTTGCTTTTCATATGGTGGTACAAATTGAGGGAAGGGAATGTTTCTCAAAGAGCACTATGTTTAAAGGGAAGTGTTTTCGTAATCGCATTTGTGATTCGACTTGTCATGCTGAAGGTTTTCCGGGTGGTGGCAAATGCATGGATAGATTCATTAGAGGACGTTGCTTCTGCAAAAACAGTACCTGTCCACCTCCTATTAGTATTTACCGCCAGTGGAAATAA 261 0.4061 MNKTYFGFFFLLLLAFHMVVQIEGRECFSKSTMFKGKCFRNRICDSTCHAEGFPGGGKCMDRFIRGRCFCKNSTCPPPISIYRQWK 86
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g04410 86 Pfam Gamma-thionin family 26 72 - -
Trre5g04410 86 Gene3D - 20 80 IPR036574 -
Trre5g04410 86 ProSitePatterns Gamma-thionins family signature. 25 48 IPR008176 GO:0006952
Trre5g04410 86 PANTHER DEFENSIN-LIKE PROTEIN 1 4 71 - -
Trre5g04410 86 SUPERFAMILY Scorpion toxin-like 25 72 IPR036574 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g04410 Trre-Chr5 46149471 46150126 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g04410 8 70 Plant Defensins Gene Families AT2G02120 45.312 5.83e-11 51.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g04410 - - lang:109326357 72.7886