Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g04399 ATGGCAGATGTCAACCGCTCCAACAGCAACAAACCTGAGTGGCTTCAACAGTACGATCTCATCGGAAAGATCGGTGAAGGTACCTACGGTCTCGTTTTCCTTGCCAGGATCAAATCCAACCGCGGCAAATCCATCGCCATCAAGAAATTCAAACAATCTAAAGATGGCGACGGTGTTTCCCCCACCGCTATCCGTGAAATCATGTTGCTGAGGGAGATAACTCATGAAAATGTTGTGAAGCTTGTGAATGTTCATATCAATCACGCAGACATGTCTCTGTATCTGGCTTTTGATTATGCTGAACATGATCTTTATGAAATAATAAGACATCATAGAGACAAGGTCAACCAATCAATTAATCAGTACACTGTTAAGTCGATACTGTGGCAGTTGCTCAATGGGCTGAACTATCTGCACAGCAATTGGATAATACATCGAGATTTGAAGCCATCGAATATATTGGTTATGGGTGATGGGGAGGAACATGGGGTTGTTAAAGTTGCTGACTTTGGGCTTGCAAGGATATATCAAGCTCCTCTGAAGCCATTATCTGAAAATGGGGTTGTTGTAACCATTTGGTATCGTGCTCCTGAGTTGCTTCTTGGAGCAAAACATTATACCAGTGCTGTTGATATGTGGGCTGTGGGATGCATTTTTGCTGAGTTGTTGACCTTGAAGCCACTATTTCAAGGTGCAGAAGTCAAAGCTACACCAAATCCTTTTCAGCTTGATCAGCTTGACAAGATATTCAAGGTTTTAGGCCATCCCACATTAGAAAAGTGGCCTTCCTTAGCACATCTTCCCCATTGGCAACAAGATTCGCAACATATACAAGGACACAAATATGACAACGCCAATCTCTATAGTGTTGTACACCTATCTCCAAAAAGTCCTGCATATGACCTATTGTCAAAGATGCTTGAATATGATCCTCGGAGGCGTATAACAGCAGCACAGGCTATGGAGCATGAGTATTTCAAAATGGAACCACAGCCTGGGCGGAATGCACTTGTACCATGCCAACCTGGAGAGGCTTTTGTGAATTATCCCACACGTCCAGTGGACACAACTACAGATTTTGAAGGGACAACCAACATGCAGCAATCGCAGCCGGTTTCTTCTGGAGCTGCTCTTGCTGGAAACATGCCTGGTGGTCATGTATCAAATAGATCTGTCCCTCGACCAATGAATGTTGGCATGCAAAGAATGCATCAGCTGCAAGCTTATAATCTCACATCCCAGGCAGGGATGGGTAGTGGAATTAATCCTGCTGGCATCCCAATGCAACGAGGTGTTCAACAACAGGCCCATCAGCAGCAACAGTTGAGGAGGAAAGACCAAATGGGAATGCCAGGATACCCTCCACAGCAGAAATCAAGACGTATGTAA 1389 0.4449 MADVNRSNSNKPEWLQQYDLIGKIGEGTYGLVFLARIKSNRGKSIAIKKFKQSKDGDGVSPTAIREIMLLREITHENVVKLVNVHINHADMSLYLAFDYAEHDLYEIIRHHRDKVNQSINQYTVKSILWQLLNGLNYLHSNWIIHRDLKPSNILVMGDGEEHGVVKVADFGLARIYQAPLKPLSENGVVVTIWYRAPELLLGAKHYTSAVDMWAVGCIFAELLTLKPLFQGAEVKATPNPFQLDQLDKIFKVLGHPTLEKWPSLAHLPHWQQDSQHIQGHKYDNANLYSVVHLSPKSPAYDLLSKMLEYDPRRRITAAQAMEHEYFKMEPQPGRNALVPCQPGEAFVNYPTRPVDTTTDFEGTTNMQQSQPVSSGAALAGNMPGGHVSNRSVPRPMNVGMQRMHQLQAYNLTSQAGMGSGINPAGIPMQRGVQQQAHQQQQLRRKDQMGMPGYPPQQKSRRM 462
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g04399 462 Pfam Protein kinase domain 18 326 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre5g04399 462 MobiDBLite consensus disorder prediction 420 462 - -
Trre5g04399 462 CDD STKc_CDK8_like 17 326 - -
Trre5g04399 462 SUPERFAMILY Protein kinase-like (PK-like) 13 328 IPR011009 -
Trre5g04399 462 Gene3D Phosphorylase Kinase; domain 1 3 98 - -
Trre5g04399 462 SMART serkin_6 18 326 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre5g04399 462 Gene3D Transferase(Phosphotransferase) domain 1 99 341 - -
Trre5g04399 462 ProSiteProfiles Protein kinase domain profile. 18 326 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre5g04399 462 PANTHER CELL DIVISION PROTEIN KINASE 16 332 - -
Trre5g04399 462 ProSitePatterns Protein kinases ATP-binding region signature. 24 49 IPR017441 GO:0005524
Trre5g04399 462 MobiDBLite consensus disorder prediction 428 445 - -
Trre5g04399 462 FunFam Putative cyclin-dependent kinase E-1 100 339 - -
Trre5g04399 462 FunFam Cyclin-dependent kinase e-1 6 99 - -
Trre5g04399 462 MobiDBLite consensus disorder prediction 365 391 - -
Trre5g04399 462 ProSitePatterns Serine/Threonine protein kinases active-site signature. 143 155 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g04399 Trre-Chr5 46051793 46062652 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g04399 11 462 Core Cell Cycle Gene Families AT5G63610 76.522 0.0 706
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CDK8 Trre5g04399 Pkinase 4.1e-69 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g04399 K02208 - gmx:100813433 843.188