Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g04395 ATGCAGGGTGAATTAGAATTGCCACCTGGTTTCAGATTTCATCCAACTGATGAAGAATTGGTGAATCATTACTTATGTAGGAAATGTGCTGGTCAATCAATTTCTGTTCCTGTTGTCAAAGAAGTTGATTTGTATAAGTTTGATCCATGGCAGCTACCTGAAATGGGATACCAAAGTGAGAAAGAATGGTACTTTTTCTCTCCAAGGGATCGGAAATACCCGAATGGTTCGCGGCCTAATCGGGCTGCGGGAAGTGGTTATTGGAAAGCTACCGGAGCTGATAAACCGATCGGGAAATTGAAACCGATGGGGATTAAAAAGGCACTGGTTTTCTATGCCGGTAAAGCGCCGAAAGGAGTGAAAACTAATTGGATTATGCATGAATATCGTCTTGCAAATGTTGATCGATCGGCTGGCAAGAAAAACAACTTAAGGCTTGATGATTGGGTGTTATGTAGAATCTACAACAAGAAAGGGAAGATTGAGAAATTCAACACTAACAACAACATACCAAAGGTTCAAAATTATTATGAGCATGAAGAACATGAAATGAAGCCAGAAATTAAAAAATTAGGAAACTACCAATTGTACATGGACACATCAGATTCAGTTCCAAAGTTGAACACAGATTCAAGCAGTTCAGGAGGACACGTGGTTTCACCAGACATCACATGTGACAGAGAGGTTCAGAGTGAACCAAAATGGAATGAATTTGGAATACAGCTGGATGATGACGCGTTTGATTTTCAGTTCAATTACTTAGAAAATGCACTTTCTTTTGATTATGATGATGACCCTTTTGGGACCAATGATCAATACCAAATCAACCAGCTTTCACCATTACAAGACATGTTCATGTTCCAACAAAAACCATTTTGA 879 0.3914 MQGELELPPGFRFHPTDEELVNHYLCRKCAGQSISVPVVKEVDLYKFDPWQLPEMGYQSEKEWYFFSPRDRKYPNGSRPNRAAGSGYWKATGADKPIGKLKPMGIKKALVFYAGKAPKGVKTNWIMHEYRLANVDRSAGKKNNLRLDDWVLCRIYNKKGKIEKFNTNNNIPKVQNYYEHEEHEMKPEIKKLGNYQLYMDTSDSVPKLNTDSSSSGGHVVSPDITCDREVQSEPKWNEFGIQLDDDAFDFQFNYLENALSFDYDDDPFGTNDQYQINQLSPLQDMFMFQQKPF 292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g04395 292 ProSiteProfiles NAC domain profile. 7 157 IPR003441 GO:0003677|GO:0006355
Trre5g04395 292 Pfam No apical meristem (NAM) protein 8 131 IPR003441 GO:0003677|GO:0006355
Trre5g04395 292 Gene3D NAC domain 16 163 IPR036093 GO:0003677|GO:0006355
Trre5g04395 292 PANTHER NAC TRANSCRIPTION FACTOR 56 7 199 - -
Trre5g04395 292 FunFam NAC transcription factor 16 161 - -
Trre5g04395 292 SUPERFAMILY NAC domain 3 157 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g04395 Trre-Chr5 46029243 46030359 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g04395 1 292 NAC Transcription Factor Family AT1G01720 61.056 5.26e-123 351
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Trre5g04395 NAM 1.2e-38 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g04395 - - gmx:100814504 459.529