Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g04375 ATGTCTGGAACAACCGGAAAGGGGAAGAAGAGGGAGGACCATGACACTGCTTCCGACGGCGACGCCGAAACTCACGCGCCTCCCAAGAAGTCTCTCAAGAAAGATTCCGACGATGATAACTCTAATGACATCGTCGTCGCTGAGCTTGCCAAGAACAGGAGGGTTTCTGTTAGGGTTTGGCAGGGTAAGGTTTGGATCGACATTCGCGAATTTTACGTTAAAGATGGCAAGCAATTGCCTGGTAAAAAAGGTATTACATTGAGCAAAGATCAGTGGGCTGTGTTTCGCGATCACGTTGAAGAAATTGACAAGGCAGTCCAAAACAAGTCTTGA 333 0.4775 MSGTTGKGKKREDHDTASDGDAETHAPPKKSLKKDSDDDNSNDIVVAELAKNRRVSVRVWQGKVWIDIREFYVKDGKQLPGKKGITLSKDQWAVFRDHVEEIDKAVQNKS 110
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g04375 110 PANTHER RNA POLYMERASE II TRANSCRIPTIONAL COACTIVATOR 17 109 IPR045125 GO:0003713|GO:0060261
Trre5g04375 110 Pfam Transcriptional Coactivator p15 (PC4) 48 98 IPR003173 GO:0003677|GO:0006355
Trre5g04375 110 Gene3D Transcriptional Coactivator Pc4; Chain A 33 110 IPR009044 GO:0003677|GO:0006355
Trre5g04375 110 MobiDBLite consensus disorder prediction 1 41 - -
Trre5g04375 110 FunFam Putative transcriptional co-activator 37 110 - -
Trre5g04375 110 SUPERFAMILY ssDNA-binding transcriptional regulator domain 46 107 IPR009044 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g04375 Trre-Chr5 45847716 45849328 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Coactivator p15 Trre5g04375 PC4 1e-23 CL0609
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g04375 K25815 - cit:102607972 138.658