Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g04373 ATGCCCCGTGAATATCATAATTCCTCGGGCCAAATTGTTCTAGACTATGCAAAAGCGATACATGAAAGTGTTTTTGAGCAACTTCGTGTTGTTCGTGATGGTCAACTTAGAATAGTTTTCTCTCCAGACCTGAAGATATGCTCTTGGGAATTTTGTGCCCTTCGGCACGAAGAGCTCATCCCCAGAAGATTGTTAATACCCCAGGTTAGTCATATTGGAACGGTTGCTCAGAAATACCAGTCTTTAACTCAAAATACAACGCCGAATATATTTGCTCCAGTTACAAAACAATTGCAATATTCTGATACCACTGCAGAAGAGGCTGAATTACCTCGCACCCATCCTATTCGATTGGGTCTGGCTTTGAATATCTCAGTTTTCTATTATGAGATCTTGAACTCCAGATAG 408 0.4093 MPREYHNSSGQIVLDYAKAIHESVFEQLRVVRDGQLRIVFSPDLKICSWEFCALRHEELIPRRLLIPQVSHIGTVAQKYQSLTQNTTPNIFAPVTKQLQYSDTTAEEAELPRTHPIRLGLALNISVFYYEILNSR 135
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g04373 135 SUPERFAMILY 14-3-3 protein 98 134 IPR036815 -
Trre5g04373 135 PANTHER LIM DOMAIN-BINDING PROTEIN 1 97 IPR029005 -
Trre5g04373 135 Pfam LIM-domain binding protein 2 99 IPR029005 -
Trre5g04373 135 PRINTS 14-3-3 protein zeta signature 98 124 IPR000308 -
Trre5g04373 135 PRINTS 14-3-3 protein zeta signature 125 135 IPR000308 -
Trre5g04373 135 Gene3D - 70 135 IPR036815 -
Trre5g04373 135 Pfam 14-3-3 protein 103 134 IPR023410 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g04373 Trre-Chr5 45841316 45842634 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g04373 1 74 C2H2 Transcription Factor Family AT1G43850 85.135 1.53e-37 133
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g04373 - - gmx:100787573 174.096