Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g04353 ATGAACAAAACTAACTCACGGAAGCGTTCGGCGCCACCGCCGCAACCACCACCACCAACAACAAAGCAGGCACTGTCTCAGGAAGAAGAGTTCGTTGACGAAGATGTATTCATCGACGAAACCCTACTTTCCGAAGACGAAGAATCCGCAATCCTCCGTGACATTGAACAACGCCAAGCCCTAGCTGCTCGTCTCGCAAAGTGGACTCGCCCCCCTCTCTCCCAGGAATATCTCTCTCAATCTCGTAGCATTCTTTTTCAGCAGCTTGAGATTGATTATGTGATTGGAGAGAGTCATAGAGAATTGTTACCAAACAGGTCTGGACCTGCTGCTATAATTAGAATATTTGGAGTAACCAAAGAAGGACACAGTGTTTGCTGCAAGGTTCATGGGTTTGAACCATATTTCTACATCAGCTGCCCTCCTGGAATGAGACCAGATGATATCTCCCGTTTTCATCAAGTTCTTGAGGCAAGGATGAGAGAAGCCAATAGAAACAGCAATGTAAGGAATCTTGTTATTGATGTTCAGATGGTGCAGAGAAGGAGCATTATGTACTATCAACAATTAGAGTCCCAACCATTTCTCAAAATTATTGTTGCACTCCCAACAATGGTTGCTAGCTGCCGTGGTATACTTGATAGAGGTATTCAGCTTGATGGTCTTGGCATGAAAAGCTTCATGACTTATGAAAGCAATGTACTTTTTGCTCTTCGTTTCATGATTGATTGCAACATAGTTGGCGGAAATTGGATTGAAGTTCCTGTTGGAAAATATAATAAGACAACAAAAAGCTTGTCTTACTGCCAGTTAGAGTTTGATTGCCTGTATTCCGATTTGATTAGTCATGCTCCAGAAGGGGAATACTCAAAGATGGCTCCATTTCGCATTTTGAGTTTTGACATTGAATGTGCTGGTCGCAAAGGTCATTTCCCCGAACCTACCCATGATCCTGTGATCCAGATTGCTAATCTGGTAACTTTACAAGGGGAAGACCAGCCATTAATTCGTAACGTGATGACCCTTAATTCATGTTCCCCTATTGTTGGTGTTGATGTGATGTCATTTGATACAGAAGAAGAAGTTCTGCTAGCTTGGAAGGATTTCATCCGTGAAGTAGACCCTGATATTATTATTGGATATAACATCTGCAAATTTGACTTGCCGTATCTTATTGAGAGAGCTGCGGCCCTAAAAATAGCAGAATTTCCAATTCTGGGCCGTATCAGGAACAGTAGAGTTCGAGTAAAAGATACAACTTTTTCATCAAGGCAGTATGGAATCAGGGAAAGTAAAGAAGTTACAGTAGAAGGGAGAGTTCAGTTTGATTTGCTCCAGGTCATGCAAAGAGACTACAAATTAAGTTCTTATTCATTGAATTCTGTGTCAGCGCATTTTCTTTCCGAGCAGAAGGAGGATGTTCATCATTCAATTATATCTGATCTTCAGAATGGAAGTGCAGAAACTAGAAGACGCCTTGCTGTGTACTGCTTGAAGGATGCATATCTGCCCCAGCGACTTTTGGATAAATTAATGTTCGTTTACAATTATGTGGAAATGGCTCGGGTAACAGGTGTCCCAATTTCCTTTCTACTTTCCAGGGGCCAAAGCATCAAGGTGCTTTCTCAACTTCTTAGGAAGGCAAAACAAAAGAATTTGGTCATTCCTAATGCCAAGCAAGCAGGGTCAGAACAAGGAACATTTGAAGGTGCCACTGTATTAGAGGCAAGGGCTGGATTTTATGAAAAGCCAATTGCTACTTTAGATTTTGCTTCCTTGTATCCTTCTATTATGATGGCATATAATTTATGTTATTGCACACTGGTGACCCCTGAAAATGCACGCAATCTCAACATCCCTCCAGAGTCAGTGAACAAAACGCCATCTGGTGACACGTTTGTTAAATCAAATTTACAGAAGGGTATACTTCCTGAAATACTTGAAGAGCTGTTAGCAGCCCGTAAAAGGGCAAAAGCAGATTTAAAGGAGGCAAAGGATCCCCTTGAGAAGGCTGTTCTAGATGGCAGACAGTTGGCCCTTAAGATTAGTGCAAATTCTGTATATGGGTTTACAGGGGCTACTATTGGTCAGTTACCTTGCTTAGAGATATCATCAAGTGTAACAAGCTATGGTCGACAAATGATCGAGCACACTAAAAAGCTTGTGGAATATAAATTTACAACACTTAATGGCTACGAACACAATGCCGAGGTAATATATGGAGACACGGATTCAGTCATGGTACAATTTGGTGTTTCTGCTGTAGAAGAGGCTATGAACTTGGGGAGAGAAGCTGCTGATTATATTAGCGGAACTTTCATAAAACCTATCAAACTAGAATTTGAGAAGATATACTATCCATATCTCCTGATTAGCAAGAAAAGATATGCTGGTTTGTTTTGGACAAAACCAGACAATTTTGACAAAATGGACACTAAAGGTATTGAAACAGTTCGAAGAGACAATTGCTTGTTGGTCAAAAACTTGGTAAACGACTGCCTTCACAAAATACTGATTGACAGGGACGTTCCTGGGGCAGTCCAGTATGTCAAGAATGCAATTTCGGATCTTCTCATGAACCGTATGGATTTATCACTTCTGGTTATTACGAAGGGTTTGACAAAGACAGGAGATGATTATGAAGTAAAGACAGCTCATGTTGAACTCGCTGAAAGGATGCGCAAGCGAGATGCTGCTACTGCTCCAAATGTTGGAGATAGAGTACCTTACGTTATTATTAAAGCTGCCAAAGGTGCCAAGGCTTATGAGAGATCAGAAGATCCTATCTATGTGCTAGAGAACAACATACCAATAGATCCTCATTACTATCTTGAGAATCAAATTAGCAAGCCAATTCTAAGAATTTTTGAGCCAATTCTGAAGAATGCTAGCAAGGAACTTCTCCATGGAAGCCACACAAGATCTATTTCTATTTCTACTCCGTCAAACAGCGGTATAATGAAATTTGCCAAGAAACAGTATACTTGCATTGGTTGCAAAGCTGTACTTAGTGGTGGTAATCGCACTCTCTGCTCACATTGCAAAGGAAGGGAAGCTGAACTGTACTGTAAATCTGTGGCTCAAGTGTCGGATCTAGAGATACTTTTTGGGAGGTTGTGGACACAGTGTCAAGAGTGTCAAGGTTCACTTCATCAGGATGTTCTCTGCACAAGTCGAGATTGTCCAATTTTTTATCGACGTAAAAAGGCACAGAAAGATATGGCTGAAGCAAGGTTGCAATTGGACAGATGGAGCTTCTAA 3261 0.4118 MNKTNSRKRSAPPPQPPPPTTKQALSQEEEFVDEDVFIDETLLSEDEESAILRDIEQRQALAARLAKWTRPPLSQEYLSQSRSILFQQLEIDYVIGESHRELLPNRSGPAAIIRIFGVTKEGHSVCCKVHGFEPYFYISCPPGMRPDDISRFHQVLEARMREANRNSNVRNLVIDVQMVQRRSIMYYQQLESQPFLKIIVALPTMVASCRGILDRGIQLDGLGMKSFMTYESNVLFALRFMIDCNIVGGNWIEVPVGKYNKTTKSLSYCQLEFDCLYSDLISHAPEGEYSKMAPFRILSFDIECAGRKGHFPEPTHDPVIQIANLVTLQGEDQPLIRNVMTLNSCSPIVGVDVMSFDTEEEVLLAWKDFIREVDPDIIIGYNICKFDLPYLIERAAALKIAEFPILGRIRNSRVRVKDTTFSSRQYGIRESKEVTVEGRVQFDLLQVMQRDYKLSSYSLNSVSAHFLSEQKEDVHHSIISDLQNGSAETRRRLAVYCLKDAYLPQRLLDKLMFVYNYVEMARVTGVPISFLLSRGQSIKVLSQLLRKAKQKNLVIPNAKQAGSEQGTFEGATVLEARAGFYEKPIATLDFASLYPSIMMAYNLCYCTLVTPENARNLNIPPESVNKTPSGDTFVKSNLQKGILPEILEELLAARKRAKADLKEAKDPLEKAVLDGRQLALKISANSVYGFTGATIGQLPCLEISSSVTSYGRQMIEHTKKLVEYKFTTLNGYEHNAEVIYGDTDSVMVQFGVSAVEEAMNLGREAADYISGTFIKPIKLEFEKIYYPYLLISKKRYAGLFWTKPDNFDKMDTKGIETVRRDNCLLVKNLVNDCLHKILIDRDVPGAVQYVKNAISDLLMNRMDLSLLVITKGLTKTGDDYEVKTAHVELAERMRKRDAATAPNVGDRVPYVIIKAAKGAKAYERSEDPIYVLENNIPIDPHYYLENQISKPILRIFEPILKNASKELLHGSHTRSISISTPSNSGIMKFAKKQYTCIGCKAVLSGGNRTLCSHCKGREAELYCKSVAQVSDLEILFGRLWTQCQECQGSLHQDVLCTSRDCPIFYRRKKAQKDMAEARLQLDRWSF 1086
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g04353 1086 Gene3D - 814 969 IPR042087 -
Trre5g04353 1086 MobiDBLite consensus disorder prediction 1 27 - -
Trre5g04353 1086 CDD POLBc_delta 567 960 - -
Trre5g04353 1086 PRINTS DNA-directed DNA-polymerase family B signature 677 689 IPR006172 GO:0000166|GO:0003676|GO:0003887
Trre5g04353 1086 PRINTS DNA-directed DNA-polymerase family B signature 738 746 IPR006172 GO:0000166|GO:0003676|GO:0003887
Trre5g04353 1086 PRINTS DNA-directed DNA-polymerase family B signature 585 598 IPR006172 GO:0000166|GO:0003676|GO:0003887
Trre5g04353 1086 NCBIfam DNA polymerase (pol2) 351 957 - -
Trre5g04353 1086 Pfam DNA polymerase family B 526 959 IPR006134 GO:0000166|GO:0003677
Trre5g04353 1086 SUPERFAMILY DNA/RNA polymerases 551 961 IPR043502 -
Trre5g04353 1086 ProSitePatterns DNA polymerase family B signature. 740 748 IPR017964 GO:0000166|GO:0003676
Trre5g04353 1086 Gene3D Palm domain of DNA polymerase 568 797 IPR023211 -
Trre5g04353 1086 Pfam C4-type zinc-finger of DNA polymerase delta 996 1067 IPR025687 -
Trre5g04353 1086 Gene3D DNA Polymerase, chain B, domain 1 90 266 - -
Trre5g04353 1086 Gene3D Helix hairpin bin 641 693 - -
Trre5g04353 1086 Gene3D - 294 512 IPR036397 GO:0003676
Trre5g04353 1086 Pfam DNA polymerase family B, exonuclease domain 119 462 IPR006133 -
Trre5g04353 1086 SUPERFAMILY Ribonuclease H-like 110 532 IPR012337 -
Trre5g04353 1086 CDD DNA_polB_delta_exo 289 518 - -
Trre5g04353 1086 SMART polmehr3 293 752 IPR006172 GO:0000166|GO:0003676|GO:0003887
Trre5g04353 1086 FunFam DNA polymerase 641 693 - -
Trre5g04353 1086 FunFam DNA polymerase 90 265 - -
Trre5g04353 1086 FunFam DNA polymerase 333 566 - -
Trre5g04353 1086 PANTHER DNA POLYMERASE CATALYTIC SUBUNIT 69 1052 - -
Trre5g04353 1086 FunFam DNA polymerase 814 970 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g04353 Trre-Chr5 45693635 45706524 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g04353 28 1086 Core DNA Replication Machinery Family AT5G63960 82.004 0.0 1853
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g04353 K02327 - gmx:100817379 1964.12