Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g04348 ATGGGAAATACGGAATCAATGTCTGAATCTCAACATGAATTTTACTACCAACACCCTCCTAGTTATGATGGGAGTTCGGTGAGTAATACCTATCATCAACCTTCTTCTTATGCTGGGAGTTTAGATGGCACTACCTATGATCAACCCTCTTCTTATACTGGAATTTCGGGGAATACTAACCATCAACAACCGTCTTCGCATGCTACAAGTTCGAGGAATACTCGCAATCGTCATAACCAGAAACCAACATATATAGCTGACAATTTTAGCTCATTGGATCAGGTTGTTTCTGCTCTGAGAGAAGCTGGTCTAGAATCTTCAAATTTAATACTTGGTATTGATTTCACCAAAAGTAATGAATGGTCAGGTAAGTACTCGTTCCACCGGAAGAGCCTTCATCATATCGGAAACACTCCTAATCCATATGAGCAAGCAATCTCCATAATTGGCCGTACACTGTCTACTTTTGATGAAGATAATTTGATACCATGTTTTGGCTTTGGCGATGCTTCTACACACGATCAGAACGTGTTCAGTTTTTATACTGATAATAGAGTTTGTCACGGTTTTGAGGAAGTACTTGCACGCTATAGACAGATTGTTCCACTCTTGAAACTGTCAGGGCCAACATCATTTGCCCCTGTAATTGATGCAGCAATTGACATTGTAGAAAGAAACAATGGTCAATATCATGTTCTTGTCATTATTGCTGATGGACAGGTTACGAGAAATCCTGGTACACCGCAAGGAAAGCTTAGTCCACAAGAACAAGCAACAATTAATTCCATAATTGCTGCAAGTCATTATCCTCTTTCAATTATTTTGGTTGGAGTTGGAGATGGACCATGGGACGAGATGAAGCACTTTGATGATAACATTACCGGGCGCTTATTTGACAACTTTCAGTTTGTGAACTTCACAAAGATAATGTCTGAGAACACGGAAGCATCCAAGAAGGAAACAGAATTTGCACTTGCTGCCCTTATGGAGATTCCATTTCAGTTCCGGGCAGCCCAAAATATTCAACTTACCAATGAACCAGTTCATTATCAACATAAAAGACCTCTCCCTCCACCTAAGGAAGTAATAGATCACGATAATGCATTCACTGCGACTCCACGCATGACAAATTTCAAGTCAACTGAAGCAACAGCTCCTGCCAGTGAAGAACCAGTATGCCCCATTTGCCTAACCAATCCAAAGGACATGGCTTTTGGATGCGGCCATACAACTTGCAAGGAGTGTGGTGCAACTTTATCTTCATGCCCTATGTGCAGGCAACAAATTACAACTCGCTTGAGATTATATACTTGA 1314 0.4087 MGNTESMSESQHEFYYQHPPSYDGSSVSNTYHQPSSYAGSLDGTTYDQPSSYTGISGNTNHQQPSSHATSSRNTRNRHNQKPTYIADNFSSLDQVVSALREAGLESSNLILGIDFTKSNEWSGKYSFHRKSLHHIGNTPNPYEQAISIIGRTLSTFDEDNLIPCFGFGDASTHDQNVFSFYTDNRVCHGFEEVLARYRQIVPLLKLSGPTSFAPVIDAAIDIVERNNGQYHVLVIIADGQVTRNPGTPQGKLSPQEQATINSIIAASHYPLSIILVGVGDGPWDEMKHFDDNITGRLFDNFQFVNFTKIMSENTEASKKETEFALAALMEIPFQFRAAQNIQLTNEPVHYQHKRPLPPPKEVIDHDNAFTATPRMTNFKSTEATAPASEEPVCPICLTNPKDMAFGCGHTTCKECGATLSSCPMCRQQITTRLRLYT 437
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g04348 437 PANTHER COPINE FAMILY PROTEIN 1 53 414 - -
Trre5g04348 437 Pfam Zinc finger, C3HC4 type (RING finger) 391 431 - -
Trre5g04348 437 SUPERFAMILY vWA-like 107 290 IPR036465 -
Trre5g04348 437 SUPERFAMILY RING/U-box 388 432 - -
Trre5g04348 437 Pfam Copine 131 343 IPR010734 -
Trre5g04348 437 ProSiteProfiles Zinc finger RING-type profile. 393 426 IPR001841 -
Trre5g04348 437 SMART ring_2 393 425 IPR001841 -
Trre5g04348 437 MobiDBLite consensus disorder prediction 1 83 - -
Trre5g04348 437 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 376 437 IPR013083 -
Trre5g04348 437 SMART VWA_4 106 309 IPR002035 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g04348 Trre-Chr5 45628227 45631315 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g04348 379 436 C3H Transcription Factor Family AT3G07200 37.313 8.01e-06 44.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g04348 K16280 - gmx:100776002 727.243