Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g04347 ATGGGAAATACGGAATCAATGTCTGAATCTCAACATGAATTTTACTACCAACACCCTCCTAGTTATGATGGGAGTTCGGTGAGTAATACCTATCATCAACCTTCTTCTTATGCTGGGAGTTTAGATGGCACTACCTATGATCAACCCTCTTCTTATACTGGAATTTCGGGGAATACTAACCATCAACAACCGTCTTCGCATGCTACAAGTTCGAGGAATACTCGCAATCGTCATAACCAGAAACCAACATATATAGCTGACAATTTTAGCTCATTGGATCAGGTTGTTTCTGCTCTGAGAGAAGCTGGTCTAGAATCTTCAAATTTAATACTTGGTATTGATTTCACCAAAAGTAATGAATGGTCAGGTAAGTACTCGTTCCACCGGAAGAGCCTTCATCATATCGGAAACACTCCTAATCCATATGAGCAAGCAATCTCCATAATTGGCCGTACACTGTCTACTTTTGATGAAGATAATTTGATACCATGTTTTGGCTTTGGCGATGCTTCTACACACGATCAGAACGTGTTCAGTTTTTATACTGATAATAGAGTTTGTCACGGTTTTGAGGAAGTACTTGCACGCTATAGACAGATTGTTCCACTCTTGAAACTGTCAGGGCCAACATCATTTGCCCCTGTAATTGATGCAGCAATTGACATTGTAGAAAGAAACAATGGTCAATATCATGTTCTTGTCATTATTGCTGATGGACAGGTTACGAGAAATCCTGGTACACCGCAAGGAAAGCTTAGTCCACAAGAACAAGCAACAATTAATTCCATAATTGCTGCAAGTCATTATCCTCTTTCAATTATTTTGGTTGGAGTTGGAGATGGACCATGGGACGAGATGAAGCACTTTGATGATAACATTACCGGGCGCTTATTTGACAACTTTCAGTTTGTGAACTTCACAAAGATAATGTCTGAGAACACGGAAGCATCCAAGAAGGAAACAGAATTTGCACTTGCTGCCCTTATGGAGATTCCATTTCAGTTCCGGGCAGCCCAAAATATTCAACTTACCAATAGTGAACCAGTTCATTATCAACATAAAAGACCTCTCCCTCCACCTAAGGAAGTAATAGATCACGATAATGCATTCACTGCGACTCCACGCATGACAAATTTCAAGTCAACTGAAGCAACAGCTCCTGCCAGTGAAGAACCAGTATGCCCCATTTGCCTAACCAATCCAAAGGACATGGCTTTTGGATGCGGCCATACAACTTGCAAGGAGTGTGGTGCAACTTTATCTTCATGCCCTATGTGCAGGCAACAAATTACAACTCGCTTGAGATTATATACTTGA 1317 0.4085 MGNTESMSESQHEFYYQHPPSYDGSSVSNTYHQPSSYAGSLDGTTYDQPSSYTGISGNTNHQQPSSHATSSRNTRNRHNQKPTYIADNFSSLDQVVSALREAGLESSNLILGIDFTKSNEWSGKYSFHRKSLHHIGNTPNPYEQAISIIGRTLSTFDEDNLIPCFGFGDASTHDQNVFSFYTDNRVCHGFEEVLARYRQIVPLLKLSGPTSFAPVIDAAIDIVERNNGQYHVLVIIADGQVTRNPGTPQGKLSPQEQATINSIIAASHYPLSIILVGVGDGPWDEMKHFDDNITGRLFDNFQFVNFTKIMSENTEASKKETEFALAALMEIPFQFRAAQNIQLTNSEPVHYQHKRPLPPPKEVIDHDNAFTATPRMTNFKSTEATAPASEEPVCPICLTNPKDMAFGCGHTTCKECGATLSSCPMCRQQITTRLRLYT 438
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g04347 438 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 377 438 IPR013083 -
Trre5g04347 438 SUPERFAMILY RING/U-box 389 433 - -
Trre5g04347 438 SUPERFAMILY vWA-like 107 290 IPR036465 -
Trre5g04347 438 Pfam Copine 131 343 IPR010734 -
Trre5g04347 438 ProSiteProfiles Zinc finger RING-type profile. 394 427 IPR001841 -
Trre5g04347 438 PANTHER COPINE FAMILY PROTEIN 1 53 415 - -
Trre5g04347 438 SMART ring_2 394 426 IPR001841 -
Trre5g04347 438 Pfam Zinc finger, C3HC4 type (RING finger) 392 432 - -
Trre5g04347 438 MobiDBLite consensus disorder prediction 1 83 - -
Trre5g04347 438 SMART VWA_4 106 309 IPR002035 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g04347 Trre-Chr5 45628227 45631315 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g04347 380 437 C3H Transcription Factor Family AT3G07200 37.313 7.89e-06 44.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g04347 K16280 - gmx:100776002 731.48