Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g04336 ATGAAGAAACAATGGTGTGAGATTGAGGCAATAGGAATCAATTACATGATCCACAGCACACAAACAACAAAACAACCTTTTAAAATCTTCAACAAACCTCCAAAACCAGAAGATGAAGCAAAAACTGACCAATGGCCAAGTAGTGGAGTTAAGCATGTTCTCAAGAATGTTAATTGCATAGCCAAGCCATGTGAAATTCTAGCAATTGTTGGGCCAAGTGGAGCAGGAAAATCATCACTGCTTGAGATTCTGGCTGGTAGAGTTAGTCCACAAAATGGTGGTTCTATCTTGGTGAATCAAGAGCATATAGATAAATCTCAGTTCAGGAAAATTTCAGGGTATGTTACACAAAAGGATACCCTTTTCCCGTTACTTACAGTTGAAGAAACCATGATGTTTAGTGCAAAACTAAGGCTAAATCTTCCTCACGAAAAACTATGCTCCAAGGTTAAGTCTCTGATTCAAGAGCTTGGTCTTAGTCATGTTGCTAAGACTAGAGTAGGAGATGGAGATGACAGGGTCCGTGGAATATCCGGTGGTGAGAGGCGCCGAGTTTCAGTTGGTGTTGAAGTCATACATGATCCAAAAGTGTTGATTCTTGATGAAGCAACTTCGGGTCTTGACAGTACCTCAGCTTTGCAAATAATTGAGATGCTTAAAGTCATGGCCGAATCTAGGGGAAGAACTATAATACTAAGTATTCATCAACCCGGGTTCAGGATAGTGAAGCTGTTCAATTCAATACTGCTGTTAGCCAATGGCAGTGTGTTACATCATGGTACTGTGGATCTGTTGGATGTGAATCTAAGGTTGATGGGTTTAGAGCTTCCTCTTCACGTTAATGTTGTTGAGTTTGCTATGGAATCCATTGAGACCATTCAGCAACAACAACAGCAAAAAAGTCAGCAAGTTCAGGTCGAAGCACCGAAACAATTACTAGGGACGATGCGACTAAAGAAAGCTGATGATCAAGGTGAAAGTAGAAGTGGTAAGTTTACTCTACAACAGCTATTTCAACAATCCAAGGTATTTGACATAGAAAACATGAATGTCGGAATGGATTTCTCTTGTCATCATGCTAATTCTAGATTCAGAGAAACTGTGATTCTTGCTCATAGGTTCTCCAAAAACATCATTCGTACAAAAGAGCTGTTTGCATTCAGGACAATTCAGATGCTGATTTCTGGGCTGATTTTGGGATCCATCTATGGTAATCTCAAAGATGGTATAGTGGGAGCAGAACAAAGGGTTGGTCTATTTGCTTTCATATTAACGTATTTGTTAACAAGCACCATTGAAGCTCTGCCAATTTTTCTGCAAGAAAGGGAGATTCTGATGAAGGAGATTTCAAGTGGAAGCTACAGAGTTTCATCCTATGCTATTGCTAATAGCCTAGTTTACTTGCCATTTCTACTCATACTAGCCATTTTATTCGCAGTGCCACTATACTGGCTTATCGGTCTCAACCAAAATTTCACAGCATTTTTGCACTTTTTGTTGCTAATATGGCTGGTTTTGTATACCGCGAATTCGGTTGTGGTATGTTTCAGTGCTCTGGTGCCTAATTTCATCGTTGGAAATTCAGTAATCGCCGGTGTCATTGGTTCATCTTTTTTGTTCTCTGGTTACTTCATATCCAATCATGAAATTCCGAAGTACTGGATTTTCATGCATTATTTGTCTCTATTTAAGTATCCTTTCGAAGGGTTTCTAATCAATGAGTTCTCCAACTCAAAGAAGTGCTTGGAGTATATGTTTGGGGCATGTGTGATGAGGGGAGAGGATGTACTTAAAGAAGAAGGGTATGGAGATACAGATGCACACAGAGTGTCAGCTTCTGAAAACCATGGTGATTCCTCAAGAGAGTTCACATGGCTTGTACTTTTCTGCGGATAG 1896 0.3993 MKKQWCEIEAIGINYMIHSTQTTKQPFKIFNKPPKPEDEAKTDQWPSSGVKHVLKNVNCIAKPCEILAIVGPSGAGKSSLLEILAGRVSPQNGGSILVNQEHIDKSQFRKISGYVTQKDTLFPLLTVEETMMFSAKLRLNLPHEKLCSKVKSLIQELGLSHVAKTRVGDGDDRVRGISGGERRRVSVGVEVIHDPKVLILDEATSGLDSTSALQIIEMLKVMAESRGRTIILSIHQPGFRIVKLFNSILLLANGSVLHHGTVDLLDVNLRLMGLELPLHVNVVEFAMESIETIQQQQQQKSQQVQVEAPKQLLGTMRLKKADDQGESRSGKFTLQQLFQQSKVFDIENMNVGMDFSCHHANSRFRETVILAHRFSKNIIRTKELFAFRTIQMLISGLILGSIYGNLKDGIVGAEQRVGLFAFILTYLLTSTIEALPIFLQEREILMKEISSGSYRVSSYAIANSLVYLPFLLILAILFAVPLYWLIGLNQNFTAFLHFLLLIWLVLYTANSVVVCFSALVPNFIVGNSVIAGVIGSSFLFSGYFISNHEIPKYWIFMHYLSLFKYPFEGFLINEFSNSKKCLEYMFGACVMRGEDVLKEEGYGDTDAHRVSASENHGDSSREFTWLVLFCG 631
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g04336 631 Pfam ABC transporter 54 205 IPR003439 GO:0005524
Trre5g04336 631 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 51 264 IPR027417 -
Trre5g04336 631 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 51 590 - -
Trre5g04336 631 Gene3D - 42 317 IPR027417 -
Trre5g04336 631 SMART AAA_5 63 399 IPR003593 GO:0016887
Trre5g04336 631 FunFam ABC transporter G family member 5 39 302 - -
Trre5g04336 631 ProSitePatterns ABC transporters family signature. 177 191 IPR017871 GO:0005524|GO:0016887
Trre5g04336 631 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 34 278 IPR003439 GO:0005524
Trre5g04336 631 Pfam ABC-2 type transporter 368 575 IPR013525 GO:0016020|GO:0140359
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g04336 Trre-Chr5 45483640 45485617 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g04336 45 265 Calmodulin-binding Proteins AT2G36910 27.753 9.62e-13 69.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g04336 K05681 - gmx:121172640 888.641