Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g04333 ATGAACGAAGCTCAAACAGAAATCAACATTCCTCACTTGTTTAGATGTCCTATAAGTCTTGATTTGTTGGAAGATCCAGTGACTTTAATCACTGGTCAAACCTATGATAGATCAAACATAGAAAAATGGATTTCTGCAGCAATTAAGGCCTTATCTGCATTATCTTCATTGGAATCAAACAAAGAGAGTTTAGTGAAAGGAGGAGCAATAGATGGAATCATAACATATATTTCAAGATGTGAAAATGGACAAAAGATGAATTTGGCTCCACTTGCAATGGCAACATTGAAGAAACTTTTGGTTTTGGAAAGTGGTAAAGAAGCATTGGTGAATCATGTAAATGGTATTGAAACTTTGGTGAAGATGGTTTTTAAGGTATGTAATCAAGAGTGTAGTGAAAGTGCTGTTGGAATACTTTCAATTGTTTGTAGTGATTTTGGAATTGCTAGAGAAGTAGCTATTGGAGCTGGTGTTTTGAGTCAATTGTTGTTTCTTCTGCAGAGTCAATGTGGTACTAAAACTAAAACTAAGGCAAGAATGTTGCTTAAGTTGTTGAGATCAAAGTGGAGTGAAGAATCAATGCAGCTTTAG 591 0.3503 MNEAQTEINIPHLFRCPISLDLLEDPVTLITGQTYDRSNIEKWISAAIKALSALSSLESNKESLVKGGAIDGIITYISRCENGQKMNLAPLAMATLKKLLVLESGKEALVNHVNGIETLVKMVFKVCNQECSESAVGILSIVCSDFGIAREVAIGAGVLSQLLFLLQSQCGTKTKTKARMLLKLLRSKWSEESMQL 196
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g04333 196 ProSiteProfiles U-box domain profile. 9 44 IPR003613 GO:0004842|GO:0016567
Trre5g04333 196 SUPERFAMILY ARM repeat 43 186 IPR016024 -
Trre5g04333 196 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 2 63 IPR013083 -
Trre5g04333 196 PANTHER WDSAM1 PROTEIN 45 192 IPR045185 GO:0061630
Trre5g04333 196 Pfam U-box domain 10 45 IPR003613 GO:0004842|GO:0016567
Trre5g04333 196 SUPERFAMILY RING/U-box 5 45 - -
Trre5g04333 196 SMART Ubox_2 13 70 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g04333 Trre-Chr5 45455949 45457181 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g04333 8 45 U-box Gene Family AT3G19380 68.421 4.69e-14 67.8