Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g04327 ATGAATCTCCCATCTGTCACATTCACCCACTATCCCTCTCACCATCTCGTTTCTCCTCTCTATTGTAAACTTCCCACAGCCACTACAAGGGGAAAAAGCGTGGATAGTATTGCAATTGAAGCTCGTAATCTGAATTTCTCATTCACTTCAAGACAAACCAAGGATGTGACAGTTCTTAGAGATTGTTCAATTCGCATTCCTTCTGGGCAATTTTGGATGCTTCTTGGACCCAATGGGTGTGGAAAATCAACACTCTTGAAGATTTTGGCTGGTTTGTTGATTCCAACTTCAGGAACAGTATATGTGAATGAACCTAAAAGTTTTGTTTTCCAAAATCCAGATCATCAGGTGGTGATGCCTACAGTAGATTCTGATGTTGCATTTGGTCTTGGTAAAATCAATTTGGCTGATGATGAAGTCAGATCTAGGGTGTCACAAGCTTTACATGCTGTTGGTTTATCTGACTACATGAAGAGATCTGTCCAAACTCTGAGTGGTGGTCAGAAGCAGAGGGTTGCCATTGCTGGTGCTCTAGCAGAAGCTTGTAAGGTTCTATTGTTGGATGAGCTCACAACTTTCCTAGATGAAACTGACCAGGTTGGAGTTATCAAAGCTGTTAGGAACTGTCTGGATACTTCTGAAGAAGTCACAGCATTATGGGTCACCCATCGTTTGGAAGAACTAGAGCACGCAGATGGTGCAATCTACATGGATGATGGAAAGGTAGTCATGCATGGAGATCCGGCAAGCATACGGAGTTTCATTGAAGACAGACAATCTGCCTATATTAACCAGATTAATTCTTAA 807 0.4201 MNLPSVTFTHYPSHHLVSPLYCKLPTATTRGKSVDSIAIEARNLNFSFTSRQTKDVTVLRDCSIRIPSGQFWMLLGPNGCGKSTLLKILAGLLIPTSGTVYVNEPKSFVFQNPDHQVVMPTVDSDVAFGLGKINLADDEVRSRVSQALHAVGLSDYMKRSVQTLSGGQKQRVAIAGALAEACKVLLLDELTTFLDETDQVGVIKAVRNCLDTSEEVTALWVTHRLEELEHADGAIYMDDGKVVMHGDPASIRSFIEDRQSAYINQINS 268
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g04327 268 ProSitePatterns ABC transporters family signature. 164 178 IPR017871 GO:0005524|GO:0016887
Trre5g04327 268 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 39 264 IPR003439 GO:0005524
Trre5g04327 268 SMART AAA_5 68 241 IPR003593 GO:0016887
Trre5g04327 268 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 34 256 IPR027417 -
Trre5g04327 268 Gene3D - 34 267 IPR027417 -
Trre5g04327 268 CDD ABC_cobalt_CbiO_domain1 40 241 IPR015856 GO:0005524|GO:0016020|GO:0055085
Trre5g04327 268 FunFam ABC transporter I family member 10 35 265 - -
Trre5g04327 268 Pfam ABC transporter 59 191 IPR003439 GO:0005524
Trre5g04327 268 PANTHER ABC TRANSPORTER I FAMILY MEMBER 10 39 253 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g04327 Trre-Chr5 45402487 45406058 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g04327 39 246 Calmodulin-binding Proteins AT2G36910 31.416 6.43e-23 96.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g04327 - - gmx:100813654 429.098
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g04327 5 45402487 45406058 Trre5g04327 5 45402487 45406058 ECH