Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g04319 ATGCCCACTTGGTGGGGTAAAAAATCAACCAAGTCCAAGGACCTCGAGTCACGTGGCGGCAGCAGCAGCAGTGGCGGTGGTGGTAGTAGCAGCGGTGGTGTGATTCATTTCAATTTCAACAAATCGCCGATCAGAAACGGTTATTATAAAGCTGAAAACCCTAATGATGGTTTGAATTTTAGAAATTCTCCCAGATCCAGTAGGGATTTTACTCCTTCAAGTGATTCGATAGGTCTTCCTTTGCCTCAGCCTCGTCCTTCTGTTTCTTCTACACAAAGCTTTAGCAATGATCAAGGGAATACTATTACTTTTGGATCTGCTTCTGTTTCTGCTGGTTCTAGCATTAGCTCCAATGCTTCTTCTGATGATCCTTCAATTTCTAATTCTCAGATTATTACCGCTAGAGGACAATGTGAAACAAAGTTCAATGTGAGGCCTAAAAGCCCGGGTCCTGGGTCAAGAGGGCCTACCAGTCCAACATCACCTCTTCATGCAAGGTTGCATGTTTTGAGTCTCGACTCACCTACAGGTAAGCAAGAAGATGGAAGGAGTGAATGTCATCCATTGCCTCTTCCACCAGGCTCTCCGACTAGTGCTTCTCTTCCCAATAACACGAGATCAAATGTACTGCTAGAAAATAGTACCGCTAGCCGTGGCAGGTGGAAGAAAGGAAAACTTCTAGGTCGGGGAACATTTGGGCATGTTTACTTGGGATTCAATAGTGAAAGTGGACAATTGTGTGCAATAAAAGAAGTCAGGGCTGTCGGTGATGATCAAACCTCAAAAGAGTGCCTCAAACAACTTAATCAGGAGATAGATTTGCTGAGTCAGCTTTCACATCCAAATATTGTTCAATACCATGGAAGTGATATGGGAGAAGAAACACTTTCCGTTTATTTGGAATATGTCTCTGGAGGTTCTATTCATAAATTACTTCAGGAATATGGGTCCTTCAAGGAGCCTGTCATCCAAAATTATACCAGGCAGATTCTCTCTGGACTTTCCTATCTTCATTCGAGAAATACAGTGCATAGGGATATTAAAGGGGCGAACATACTAGTTGATCCTAATGGTGTAATCAAATTGGCGGACTTTGGAATGGCTAAACATATAAATTCTTCGTCCTCAATGCTTTCTTTCAAAGGAAGTCCACACTGGATGGCACCAGAGGTTGTAATGAATACAAATGGCTATAGTCTTCCTGTTGATATTTGGAGCTTGGGATGCACAATTCTTGAAATGGCAACATCAAAGCCTCCTTGGAATCAGTATGAAGGGGTGGCTGCAATATTTAAAATTGGTAACAGCAAAGACATGCCTGAAATTCCCGACCATCTCTCAAATGATGCAAAGAATTTCATTAAGCTATGCTTGCATCGAGATCCTTCAACTCGCCCTACAGCCCAAATGTTACTAAATCACCCCTTCATTCGAGATCAGTCAGCAACAAAAGCTGCTAATGTCAGAATAACCAGGGATGCTTTTCCATACATGTTTGATGGAAGCCGGACGCCGCCAGCTTCAGATCTTCATTCCAGTCGAACTTGTATTGCTTCTCAGGATGCAGATTATGCAACAAAAACAGTTGTTGCAGCTTCACGAACTCCAAGGAGCCCAAGAGACAACACAAGAACGATCACATCTTTGCCTGTATCTCCGTGTTCAAGTCCATTGCGACAGTATGGTGCTGCACACAAGAGTGGTTTCCTTTCTCCTCCTCATCCAAGCTATACAATGATGGGACAAAAGCCCCTTGTTTCATATGAATCATATCCAATGAGATCAAATACCAAGTTTACTCTTGATCCTTGGCATGAAACACCTATGTACAAAGCCCACACACCTGGTGGATCCCCAAGAAGACTTATTTGA 1872 0.4295 MPTWWGKKSTKSKDLESRGGSSSSGGGGSSSGGVIHFNFNKSPIRNGYYKAENPNDGLNFRNSPRSSRDFTPSSDSIGLPLPQPRPSVSSTQSFSNDQGNTITFGSASVSAGSSISSNASSDDPSISNSQIITARGQCETKFNVRPKSPGPGSRGPTSPTSPLHARLHVLSLDSPTGKQEDGRSECHPLPLPPGSPTSASLPNNTRSNVLLENSTASRGRWKKGKLLGRGTFGHVYLGFNSESGQLCAIKEVRAVGDDQTSKECLKQLNQEIDLLSQLSHPNIVQYHGSDMGEETLSVYLEYVSGGSIHKLLQEYGSFKEPVIQNYTRQILSGLSYLHSRNTVHRDIKGANILVDPNGVIKLADFGMAKHINSSSSMLSFKGSPHWMAPEVVMNTNGYSLPVDIWSLGCTILEMATSKPPWNQYEGVAAIFKIGNSKDMPEIPDHLSNDAKNFIKLCLHRDPSTRPTAQMLLNHPFIRDQSATKAANVRITRDAFPYMFDGSRTPPASDLHSSRTCIASQDADYATKTVVAASRTPRSPRDNTRTITSLPVSPCSSPLRQYGAAHKSGFLSPPHPSYTMMGQKPLVSYESYPMRSNTKFTLDPWHETPMYKAHTPGGSPRRLI 623
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g04319 623 SUPERFAMILY Protein kinase-like (PK-like) 219 544 IPR011009 -
Trre5g04319 623 MobiDBLite consensus disorder prediction 137 205 - -
Trre5g04319 623 SMART serkin_6 221 477 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre5g04319 623 MobiDBLite consensus disorder prediction 1 101 - -
Trre5g04319 623 ProSiteProfiles Protein kinase domain profile. 221 477 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre5g04319 623 FunFam Mitogen-activated protein kinase kinase kinase 219 501 - -
Trre5g04319 623 Pfam Protein kinase domain 222 477 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre5g04319 623 MobiDBLite consensus disorder prediction 16 37 - -
Trre5g04319 623 MobiDBLite consensus disorder prediction 56 101 - -
Trre5g04319 623 Gene3D Transferase(Phosphotransferase) domain 1 218 498 - -
Trre5g04319 623 ProSitePatterns Protein kinases ATP-binding region signature. 227 250 IPR017441 GO:0005524
Trre5g04319 623 MobiDBLite consensus disorder prediction 532 551 - -
Trre5g04319 623 CDD STKc_MEKK1_plant 220 477 - -
Trre5g04319 623 PANTHER MAP KINASE KINASE KINASE SSK2-RELATED-RELATED 68 486 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g04319 Trre-Chr5 45338916 45343708 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g04319 1 540 MAP Kinase Kinase Kinase AT1G53570 55.793 0.0 532
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Trre5g04319 Pkinase 8.7e-75 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g04319 K04421 - gmx:100813122 888.641