Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g04312 ATGGCCGAACCAAAATTGATTCCAGGGTTTCGGTTTCATCCCACTGATGTTGAGCTCGTTATGTATTTTCTCAAGAGGAAGATTATGGGTAGAAAATTCCCTTTTGATGTCATTGCTGAACTTGACATTTACAAGTATGCTCCATGGGATCTACCAGATAAATCTTTGCTCAAAAGTGGTGATTTGAAATGGTACTTCTTTAGCCCTACAGGAAAGAAATACTCCGTTGGAGGGAGGATGAATCGAGCGACGGAGATTGGGTTCTGGAAGACTACGGGGAAGGATAGATCAATTCAACATAACAATCAAGTGGTGGGGATGATAAGAACCCTGGTGTTTCACATCGGCAAAGCTCCTAAAGGAGACCGAACTGATTGGGTTATGCATGAGTTCAGACTTGATGACAAATACCAAGCTGACAAAGGCATTCCACAGAGTTCCTATGTGATTTGCAGGGTATTTCAAAAGGAAGGTCCTGGTCCCAGGAATGGTGCACAGTATGGGAAACCATTTGATGAGAAAGACTGGGATAGCGAAGAGGAAATTGATTGTGTAGAAGCTGTCCCTATTGCTGTTGTGTCTGCACCAGCTCCTATTCTACCTGGCCCAAGCCATATTTCTGCAGCAAATGACATGCATCCATCGGCAAGTGGATGCATTGGACCGACCTCTGTATCATGTCTATCAAGATTGATGCCCTCTGACTTGACACAGCCTTCAGCTCCAAGCAATCAAGTTGACGACGGCATTTTATCCATGCTTGCTATTTTCAAAGATGATAATACATTGGCGGGGAATGAAAACAATGAATCTGAGAAGGTTGGTAGTCCTGGTCAGGCAAACAATGCTGAAGGTGAACCTTATTTAGATCCAAATGAGATTTTTGGCGAGTTGGGAGATCTTCACAGCTTGGTTGGATTGGATGAAGGAGGCGGCTTTTCCAATGGCCAAAAAGATGAATATACCAAAACCGAAATGCTTTCTACTGACGTCTCTTTGCTTCACGAGCCCTATGATTTCATTGAGTTGAATGACCTAGAGGTGCCATTATTCTGGCAGACTAAACGCGATGGAAGTTGGGGCCAAGATAAGCAAGCGTAA 1101 0.4387 MAEPKLIPGFRFHPTDVELVMYFLKRKIMGRKFPFDVIAELDIYKYAPWDLPDKSLLKSGDLKWYFFSPTGKKYSVGGRMNRATEIGFWKTTGKDRSIQHNNQVVGMIRTLVFHIGKAPKGDRTDWVMHEFRLDDKYQADKGIPQSSYVICRVFQKEGPGPRNGAQYGKPFDEKDWDSEEEIDCVEAVPIAVVSAPAPILPGPSHISAANDMHPSASGCIGPTSVSCLSRLMPSDLTQPSAPSNQVDDGILSMLAIFKDDNTLAGNENNESEKVGSPGQANNAEGEPYLDPNEIFGELGDLHSLVGLDEGGGFSNGQKDEYTKTEMLSTDVSLLHEPYDFIELNDLEVPLFWQTKRDGSWGQDKQA 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g04312 366 ProSiteProfiles NAC domain profile. 6 156 IPR003441 GO:0003677|GO:0006355
Trre5g04312 366 Gene3D NAC domain 15 158 IPR036093 GO:0003677|GO:0006355
Trre5g04312 366 FunFam Nac domain-containing protein 86 15 159 - -
Trre5g04312 366 Pfam No apical meristem (NAM) protein 8 133 IPR003441 GO:0003677|GO:0006355
Trre5g04312 366 SUPERFAMILY NAC domain 3 156 IPR036093 GO:0003677|GO:0006355
Trre5g04312 366 MobiDBLite consensus disorder prediction 263 278 - -
Trre5g04312 366 MobiDBLite consensus disorder prediction 263 289 - -
Trre5g04312 366 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 4 237 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g04312 Trre-Chr5 45277320 45281002 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g04312 1 354 NAC Transcription Factor Family AT5G09330 44.415 8.24e-90 276
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Trre5g04312 NAM 4.1e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g04312 - - adu:107470479 473.011