Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g04309 ATGGCTACCGCCGCAGACTCGTCCCGCCAACTCTCTCAAAAGGAAGCTGACATCCAGTTGATGTTGGCTGCCGATGTCCATCTCGGCACCAAGAACTGTGACTTCCAAATGGAGCGTTACATTTTCAAACGCCGAAATGACGGTATTTATATTATTAATCTTGGAAAGACTTGGGAGAAGCTTCAACTAGCTGCTAGGGTCATTGTTGCCATTGAGAACCCTCAGGATATCATTGTCCAATCTGCAAGACCTTATGGACAGAGAGCTGTTCTCAAGTTTGCTCAGTACACCGGAGCCCACGCCATTGCTGGAAGGCACACTCCCGGAACCTTCACCAATCAGCTTCAGACTTCCTTCAGCGAGCCTCGTCTTCTCATCCTCACTGATCCAAGAACTGATCATCAGCCAATCAAGGAAGCTGCTCTTGGAAATATTCCCACAATTGCTTTCTGTGACACTGATTCTCCTATGAGATATGTTGACATTGGAATTCCCGCTAACAACAAGGGAAAGCATAGCATTGGTTGTCTCTTTTGGCTTTTGGCTAGGATGGTTTTGCAGATGCGTGGTACTATTCGCCCTGGTCTCAAGTGGGATGTGATGGTTGATCTCTTTTTCTATAGAGAACCAGAGGAGGCCAAGGAGCAAGAAGAGGATGATGTTCCTGCTCCAGATTATGCTATTGCTGATTTCAATGCAGGTTCTATCCCCACTGATGGACAGTGGCCTTCTGCTATTGATCAGCCATGGACTGATGCTGTTCCTGAACCTATTCCAGCGGTTCCTGCTGTCAACTGGTCTGCCCCAGAAGCTGTTGCAGGGGACTGGGGTGAAGCCGTTCCACCACCACAACAAATACCTGCTCCCGGAGTTGAATCCATCCAGGCAACTGGCTGGGAATAA 903 0.485 MATAADSSRQLSQKEADIQLMLAADVHLGTKNCDFQMERYIFKRRNDGIYIINLGKTWEKLQLAARVIVAIENPQDIIVQSARPYGQRAVLKFAQYTGAHAIAGRHTPGTFTNQLQTSFSEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGLKWDVMVDLFFYREPEEAKEQEEDDVPAPDYAIADFNAGSIPTDGQWPSAIDQPWTDAVPEPIPAVPAVNWSAPEAVAGDWGEAVPPPQQIPAPGVESIQATGWE 300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g04309 300 ProSitePatterns Ribosomal protein S2 signature 2. 122 146 IPR018130 GO:0003735|GO:0005840|GO:0006412
Trre5g04309 300 SUPERFAMILY Ribosomal protein S2 13 203 IPR023591 -
Trre5g04309 300 FunFam 40S ribosomal protein SA 17 223 - -
Trre5g04309 300 NCBIfam 30S ribosomal protein S2 14 209 IPR005707 GO:0003735|GO:0006412|GO:0015935
Trre5g04309 300 PRINTS Ribosomal protein S2 signature 97 114 IPR001865 GO:0003735|GO:0005840|GO:0006412
Trre5g04309 300 PRINTS Ribosomal protein S2 signature 48 57 IPR001865 GO:0003735|GO:0005840|GO:0006412
Trre5g04309 300 PRINTS Ribosomal protein S2 signature 18 36 IPR001865 GO:0003735|GO:0005840|GO:0006412
Trre5g04309 300 PRINTS Ribosomal protein S2 signature 122 139 IPR001865 GO:0003735|GO:0005840|GO:0006412
Trre5g04309 300 PRINTS Ribosomal protein S2 signature 139 150 IPR001865 GO:0003735|GO:0005840|GO:0006412
Trre5g04309 300 PRINTS Ribosomal protein S2 signature 160 174 IPR001865 GO:0003735|GO:0005840|GO:0006412
Trre5g04309 300 Pfam Ribosomal protein S2 120 185 IPR001865 GO:0003735|GO:0005840|GO:0006412
Trre5g04309 300 Pfam Ribosomal protein S2 21 115 IPR001865 GO:0003735|GO:0005840|GO:0006412
Trre5g04309 300 PANTHER 40S RIBOSOMAL PROTEIN SA 7 299 IPR005707 GO:0003735|GO:0006412|GO:0015935
Trre5g04309 300 Hamap 40S ribosomal protein SA [rps-0]. 5 269 IPR027498 GO:0003735|GO:0006412|GO:0015935
Trre5g04309 300 CDD RPS2 21 187 IPR001865 GO:0003735|GO:0005840|GO:0006412
Trre5g04309 300 MobiDBLite consensus disorder prediction 272 300 - -
Trre5g04309 300 Gene3D - 17 221 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g04309 Trre-Chr5 45192985 45194920 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g04309 5 300 Cytoplasmic Ribosomal Protein Gene Family AT3G04770 71.667 1.49e-149 419
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g04309 K02998 - gmx:548014 538.11