Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g04306 ATGCCGATAAGAGGAGAAGGTATTTATATTATTAATCTTGGAAAGACTTGGGAGAAGCTTCAACTAGCTGCTAGGGTCATTGTTGCCATTGAGAACCCTCAGGATATCATTGTCCAATCTGCAAGACCTTATGGACAGAGAGCTGTTCTCAAGTTTGCTCAGTACACCGGAGCCCACGCCATTGCTGGAAGGCACACTCCCGGAACCTTCACCAATCAGCTTCAGACTTCCTTCAGCGAGCCTCGTCTTCTCATCCTCACTGATCCAAGAACTGATCATCAGCCAATCAAGGAAGCTGCTCTTGGAAATATTCCCACAATTGCTTTCTGTGACACTGATTCTCCTATGAGATATGTTGACATTGGAATTCCCGCTAACAACAAGGGAAAGCATAGCATTGGTTGTCTCTTTTGGCTTTTGGCTAGGATGGTTTTGCAGATGCGTGGTACTATTCGCCCTGGTCTCAAGTGGGATGTGATGGTTGATCTCTTTTTCTATAGAGAACCAGAGGAGGCCAAGGAGCAAGAAGAGGATGATGTTCCTGCTCCAGATTATGCTATTGCTGATTTCAATGCAGGTTCTATCCCCACTGATGGACAGTGGCCTTCTGCTATTGATCAGCCATGGACTGATGCTGTTCCTGAACCTATTCCAGCGGTTCCTGCTGTCAACTGGTCTGCCCCAGAAGCTGTTGCAGGGGACTGGGGTGAAGCCGTTCCACCACCACAACAAATACCTGCTCCCGGAGTTGAATCCATCCAGGCAACTGGCTGGGAATAA 780 0.4782 MPIRGEGIYIINLGKTWEKLQLAARVIVAIENPQDIIVQSARPYGQRAVLKFAQYTGAHAIAGRHTPGTFTNQLQTSFSEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGLKWDVMVDLFFYREPEEAKEQEEDDVPAPDYAIADFNAGSIPTDGQWPSAIDQPWTDAVPEPIPAVPAVNWSAPEAVAGDWGEAVPPPQQIPAPGVESIQATGWE 259
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g04306 259 PANTHER 40S RIBOSOMAL PROTEIN SA 4 258 IPR005707 GO:0003735|GO:0006412|GO:0015935
Trre5g04306 259 NCBIfam 30S ribosomal protein S2 3 168 IPR005707 GO:0003735|GO:0006412|GO:0015935
Trre5g04306 259 Gene3D - 2 180 - -
Trre5g04306 259 CDD RPS2 3 146 IPR001865 GO:0003735|GO:0005840|GO:0006412
Trre5g04306 259 ProSitePatterns Ribosomal protein S2 signature 2. 81 105 IPR018130 GO:0003735|GO:0005840|GO:0006412
Trre5g04306 259 Hamap 40S ribosomal protein SA [rps-0]. 4 228 IPR027498 GO:0003735|GO:0006412|GO:0015935
Trre5g04306 259 MobiDBLite consensus disorder prediction 231 259 - -
Trre5g04306 259 SUPERFAMILY Ribosomal protein S2 3 162 IPR023591 -
Trre5g04306 259 PRINTS Ribosomal protein S2 signature 56 73 IPR001865 GO:0003735|GO:0005840|GO:0006412
Trre5g04306 259 PRINTS Ribosomal protein S2 signature 81 98 IPR001865 GO:0003735|GO:0005840|GO:0006412
Trre5g04306 259 PRINTS Ribosomal protein S2 signature 98 109 IPR001865 GO:0003735|GO:0005840|GO:0006412
Trre5g04306 259 PRINTS Ribosomal protein S2 signature 119 133 IPR001865 GO:0003735|GO:0005840|GO:0006412
Trre5g04306 259 PRINTS Ribosomal protein S2 signature 7 16 IPR001865 GO:0003735|GO:0005840|GO:0006412
Trre5g04306 259 FunFam 40S ribosomal protein SA 2 182 - -
Trre5g04306 259 Pfam Ribosomal protein S2 6 74 IPR001865 GO:0003735|GO:0005840|GO:0006412
Trre5g04306 259 Pfam Ribosomal protein S2 79 144 IPR001865 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g04306 Trre-Chr5 45123428 45127847 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g04306 4 235 Cytoplasmic Ribosomal Protein Gene Family AT3G04770 73.967 3.22e-121 345
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g04306 K02998 - gmx:100805318 462.225