Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g04305 ATGGAAACTCGGTTGAAGATGAGTACATCGCATCACCCTCAGACTGATGGTATTTATATTATTAATCTTGGAAAGACTTGGGAGAAGCTTCAACTAGCTGCTAGGGTCATTGTTGCCATTGAGAACCCTCAGGATATCATTGTCCAATCTGCAAGACCTTATGGACAGAGAGCTGTTCTCAAGTTTGCTCAGTACACCGGAGCCCACGCCATTGCTGGAAGGCACACTCCCGGAACCTTCACCAATCAGCTTCAGACTTCCTTCAGCGAGCCTCGTCTTCTCATCCTCACTGATCCAAGAACTGATCATCAGCCAATCAAGGAAGCTGCTCTTGGAAATATTCCCACAATTGCTTTCTGTGACACTGATTCTCCTATGAGATATGTTGACATTGGAATTCCCGCTAACAACAAGGGAAAGCATAGCATTGGTTGTCTCTTTTGGCTTTTGGCTAGGATGGTTTTGCAGATGCGTGGTACTATTCGCCCTGGTCTCAAGTGGGATGTGATGGTTGATCTCTTTTTCTATAGAGAACCAGAGGAGGCCAAGGAGCAAGAAGAGGATGATGTTCCTGCTCCAGATTATGCTATTGCTGATTTCAATGCAGGTTCTATCCCCACTGATGGACAGTGGCCTTCTGCTATTGATCAGCCATGGACTGATGCTGTTCCTGAACCTATTCCAGCGGTTCCTGCTGTCAACTGGTCTGCCCCAGAAGCTGTTGCAGGGGACTGGGGTGAAGCCGTTCCACCACCACAACAAATACCTGCTCCCGGAGTTGAATCCATCCAGGCAACTGGCTGGGAATAA 810 0.4778 METRLKMSTSHHPQTDGIYIINLGKTWEKLQLAARVIVAIENPQDIIVQSARPYGQRAVLKFAQYTGAHAIAGRHTPGTFTNQLQTSFSEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGLKWDVMVDLFFYREPEEAKEQEEDDVPAPDYAIADFNAGSIPTDGQWPSAIDQPWTDAVPEPIPAVPAVNWSAPEAVAGDWGEAVPPPQQIPAPGVESIQATGWE 269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g04305 269 CDD RPS2 16 156 IPR001865 GO:0003735|GO:0005840|GO:0006412
Trre5g04305 269 Gene3D - 2 190 - -
Trre5g04305 269 PANTHER 40S RIBOSOMAL PROTEIN SA 13 268 IPR005707 GO:0003735|GO:0006412|GO:0015935
Trre5g04305 269 MobiDBLite consensus disorder prediction 241 269 - -
Trre5g04305 269 ProSitePatterns Ribosomal protein S2 signature 2. 91 115 IPR018130 GO:0003735|GO:0005840|GO:0006412
Trre5g04305 269 FunFam 40S ribosomal protein SA 4 192 - -
Trre5g04305 269 NCBIfam 30S ribosomal protein S2 12 178 IPR005707 GO:0003735|GO:0006412|GO:0015935
Trre5g04305 269 SUPERFAMILY Ribosomal protein S2 14 172 IPR023591 -
Trre5g04305 269 PRINTS Ribosomal protein S2 signature 91 108 IPR001865 GO:0003735|GO:0005840|GO:0006412
Trre5g04305 269 PRINTS Ribosomal protein S2 signature 108 119 IPR001865 GO:0003735|GO:0005840|GO:0006412
Trre5g04305 269 PRINTS Ribosomal protein S2 signature 17 26 IPR001865 GO:0003735|GO:0005840|GO:0006412
Trre5g04305 269 PRINTS Ribosomal protein S2 signature 66 83 IPR001865 GO:0003735|GO:0005840|GO:0006412
Trre5g04305 269 PRINTS Ribosomal protein S2 signature 129 143 IPR001865 GO:0003735|GO:0005840|GO:0006412
Trre5g04305 269 Pfam Ribosomal protein S2 13 84 IPR001865 GO:0003735|GO:0005840|GO:0006412
Trre5g04305 269 Pfam Ribosomal protein S2 89 154 IPR001865 GO:0003735|GO:0005840|GO:0006412
Trre5g04305 269 Hamap 40S ribosomal protein SA [rps-0]. 1 238 IPR027498 GO:0003735|GO:0006412|GO:0015935
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g04305 Trre-Chr5 45123428 45128196 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g04305 16 245 Cytoplasmic Ribosomal Protein Gene Family AT3G04770 74.583 9.18e-122 347
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g04305 K02998 - gmx:100805318 462.225