Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g04299 ATGCAGAACGGAAAAGTTGCAATGGTAAAGTCTCAAAGCAAAGCAAGACTTGCCATTTTGGAATTTGCACACATGATGAGTGCTCCTATGTCCCTCATTGCTGTCCTTAATATGAAGGTACCTGATGCTATTTGGCAAGGTGGTCATAACACTCCACTCTCTGCCTCTCAGATTCTCTCCGTTGTTCGTCCTAACGGCACCGGAGATGCTGAGAACCTCCAGCGTATTCTCCGCCTGCTCACCACTTATGATATTTTTGCCGAACACTTGAGCAGTAACGGCGAAAGAAAATACTCTCTTACGGATGTCGGTAAAACTCTTGTCCCCGATGGTGATGGTCTATCCTATGCACCATACATGCTCCAACACCATCAGGATGCCTTGATGCGAGCATGGCCGATGGTGGGAGAGGCAGTGGAGGATCCAACGGTGGAGCCGTTCAAGAAGGCAAACGACGGAGAATCAGCATATGGATACTACATGAAGAGACCAGACGAAATTTCTTTGTTTTATACTTCCATGATTGGGATGTCAGTGCCCTTCATGAGAGAAATGTTGGAGAGTTATGATGGCTTCAAAGGTGTGGAAACTCTTGTTGATGTTGGTGGTAATTCTGGTGTGACTCTTAACATGATTATGCACAAATATCCAAACATACTCAAAGGCATCAATTATGATTTTCCTGATATGGTATCTTCTGCACCTCAATATCCACGTATAACACACGTTGGAGGTGACGCGCTTCAATCGGTTCCGACTGGGGATGCTATCTTCATGAAGTGGATATTTTTAACATGGACAGATGAAGAATGCAAGAAGGCCTTGCAGAACTGTTACAAGGCTCTTCCGGTGAACGGAAAATTGATTGTTTGTGAGCCGGTGCTACCGGAGCTGACCGATGAGAGTCAAAGAACAAGAGCATTGTTGGGGGGTGACATATTCATAATGACAATGTATAGAACCAAGGGAAAACACAGAACTGAGGAACAATTCAAACAACTTGGCATTTCTATTGGTTTTCTTCGTTTTCGTGCCTTCTATATTGATCCTTATTTTCCTATCCTCGAATTTCAGAAATGA 1080 0.4398 MQNGKVAMVKSQSKARLAILEFAHMMSAPMSLIAVLNMKVPDAIWQGGHNTPLSASQILSVVRPNGTGDAENLQRILRLLTTYDIFAEHLSSNGERKYSLTDVGKTLVPDGDGLSYAPYMLQHHQDALMRAWPMVGEAVEDPTVEPFKKANDGESAYGYYMKRPDEISLFYTSMIGMSVPFMREMLESYDGFKGVETLVDVGGNSGVTLNMIMHKYPNILKGINYDFPDMVSSAPQYPRITHVGGDALQSVPTGDAIFMKWIFLTWTDEECKKALQNCYKALPVNGKLIVCEPVLPELTDESQRTRALLGGDIFIMTMYRTKGKHRTEEQFKQLGISIGFLRFRAFYIDPYFPILEFQK 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g04299 359 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 20 359 IPR016461 GO:0008168
Trre5g04299 359 Gene3D Vaccinia Virus protein VP39 113 359 IPR029063 -
Trre5g04299 359 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 112 356 IPR029063 -
Trre5g04299 359 Gene3D - 3 112 IPR036388 -
Trre5g04299 359 PIRSF O-mtase 1 359 IPR016461 GO:0008168
Trre5g04299 359 Pfam O-methyltransferase domain 134 340 IPR001077 GO:0008171
Trre5g04299 359 PANTHER O-METHYLTRANSFERASE 19 346 IPR016461 GO:0008168
Trre5g04299 359 SUPERFAMILY "Winged helix" DNA-binding domain 13 110 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g04299 Trre-Chr5 45048294 45050140 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g04299 10 359 Monolignol Biosynthesis Gene Families AT3G53140 61.582 2.20e-163 459
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g04299 - - ccaj:109819366 512.301