Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g04293 ATGAACACAAATTCCCATCTGGTAGATGTTGCTGGTAATAACAGTTCAAAATGGGCTTATTCGGAAGGAAATGATAAATTAAGACCTGTTATGGGATATTCATCAAAAGATTCTTTTTCTAGAGGCAGAGGTTCATATGAGGATGATGCTATGAATGAAGACCATAGAATTTCGGATAGAAGAAGAGAATGGGACACCGATGGAAGTTACAGCAAGAAAATCTCTCCTTGGCAAGGGGAATGGGGACAAAAGAGGCACAGTCAATCTCCTATAAATGGTTGGAGCAGGAGCAGTCGGAGCCGGACTCAGAGCCGGAGCCCTCCTCGTGGTTTTAGGCGGGATTCAGGCGTTGATGATAGAAAAAGGATGAGGGTTGTAGGATCAACACGACCATGCAGAGATTTTGCTGCTGGTAAATGCAGAAGAGGCAGTCTTTGCAATTTTCCGCATCATGATAACCAAAGTCGTGAAAATAGTTGGGAGGGTAAGCACAGGGAAGATAGAGCTCCCAAATACTCTGCTACCCATGAGAGAGGTGACCATTCTCTTAAGAGTGGTAGATCTAATGAAGCTTGTATAAATTTTGCAAAAGGCAGGTGTAGAATGGGAACATCTTGCAAGTTTGTGCATGATAACGACTCTGATGGATATGGCAAAGTTTTTATGGATGAATTCACTAGAGAAAGAGAAATTGACAGAAGGCACAGAGATAATTCTTTTGAGCAGGGTGGCCGGCATGTGCCTAATCGCACTAGTGATACTCCTTGCAAATTTTTTGCTAATGGAAATTGTCGAAATGGTAAATTTTGTAAGTTTTCTCACGATAGGCAAGCATGTAGGAGCCCTGATAGAAGATTAAGGGATGATAGATGGGCAAGAAATCCAGGTAGAGATCATCAAATGTTGGATAGACAAAAATCGAGCCATTCCATTAGTCCAAATAGAAGGCTAAGAGATGATAAATGGGGTTCGGATGGCGATGTGGCTGATCCAGATAGAGTTGGGGACAGTCCAAAGCGAAATAATACTGTTTCTGATACAGCAAAGCTGATCGAGAATAAAAGTGGAAATGTAGATGCCACAGACCCAGGATTTACTACTTTATCTATAACGGATGGATATGGGCATGAGTTAGATAAGAGTGAGCTGCATGGTAAACCACCAATTTCGAGTGATACGAAGGAAGCTGATTGTTGGATAGAAGAAGATACTGGTGCCAACATGCATGGATCCCATTCAATAGTTAAAACAGACATTTGGCCAGGTGATGCAGAAATGTCTCCTGATTGGAATTATAAGACAGGATCTTCCAGCCATATGGAAGAACCTGGACAGAATAAGCATGGTATAAGGCAGGGTGGTACGCATTTAGCCATCTCAGAACCCGACAGAGTACAGCTTGCTCCAGGACAAAGCATCAATCAGAATGCACAGAATGTAAATCCTTCGCATACTTCCAGCTTCCATGCAGTTGGACAAAGTCAAGTGGATGTTCCCATTCTTCCTTCAAGTGGAGGAATTGTTGATGCTACTCACAGACAAGAAGTATCTAATGAGAAGAAGTACATTGTGGAACCAAATATCACGGATTCAGGCTTATCACAAGTTAGTTCAATAAATCCTCCAACACAAAACGCTGTAAGCAATGAACAGCTTGCTCAACTCACAACCTCTCTGGCTCATTTCCTAGGAGGAGGTCAGCAGCTGCCGCAGCTATATGCTGCTTTAAATTCTCACGATTTAAAGGACAGTCCTACCCAAGCAAAAACTCAAGTGCCTGCAATGCCTGTTTCAATCACATGCATCAAGCCTGATCCTCCCGTTGGACTCTCAAAGCAGTATGGTCCTGGGAATGATAGTATTGCGCAAACAATTGCTGATGCAAGTGGTGTGCCCCCAGCCATTCCTCCAAGTAGAAATACTGCTGAAGTGGAAATTCTGTCACAGTTGTCTAACCCTGGAAGACAAAATTGTGGTGATTCTATTAAGGGTGCCTCCTCAGAACTCGTCAAGAGTGATAATCTAATCCATTTGCAGCCTGGCCAAAACACAGTGGTGAAGAATAAGGATAACAATGAAGAGGTAGCTAAGGAAAGGAAAAATCCTGAAGATGGTCATAAAAGTACAAAAGAGAACGGTCCGCAAAACACGGACCAAAATGGTAGGCCTGATGATGCAAAGCAAACAAAGGAATTGAAAGGGATTCGTACGTTTAAATTTGCATTGGCTGAGGTTGTTAAGGAGCTACTGAAACCAGCATGGAAAGAAGGTCAAATAACTAATAAAGAAGATTATAAAACCATTGTGAAGAAAGTTCTTGATAAAGTAACATCTACCATGCAGGGGCCCAATATTCCTCAGACACAAGAGAAAATTGACCAATATTTGTCATTTTCAAAACCAAAGCTTAACAAACTTGTACAGGCATATGTGGAAAAGGTTCAGAAGCCTCAGTGA 2457 0.4208 MNTNSHLVDVAGNNSSKWAYSEGNDKLRPVMGYSSKDSFSRGRGSYEDDAMNEDHRISDRRREWDTDGSYSKKISPWQGEWGQKRHSQSPINGWSRSSRSRTQSRSPPRGFRRDSGVDDRKRMRVVGSTRPCRDFAAGKCRRGSLCNFPHHDNQSRENSWEGKHREDRAPKYSATHERGDHSLKSGRSNEACINFAKGRCRMGTSCKFVHDNDSDGYGKVFMDEFTREREIDRRHRDNSFEQGGRHVPNRTSDTPCKFFANGNCRNGKFCKFSHDRQACRSPDRRLRDDRWARNPGRDHQMLDRQKSSHSISPNRRLRDDKWGSDGDVADPDRVGDSPKRNNTVSDTAKLIENKSGNVDATDPGFTTLSITDGYGHELDKSELHGKPPISSDTKEADCWIEEDTGANMHGSHSIVKTDIWPGDAEMSPDWNYKTGSSSHMEEPGQNKHGIRQGGTHLAISEPDRVQLAPGQSINQNAQNVNPSHTSSFHAVGQSQVDVPILPSSGGIVDATHRQEVSNEKKYIVEPNITDSGLSQVSSINPPTQNAVSNEQLAQLTTSLAHFLGGGQQLPQLYAALNSHDLKDSPTQAKTQVPAMPVSITCIKPDPPVGLSKQYGPGNDSIAQTIADASGVPPAIPPSRNTAEVEILSQLSNPGRQNCGDSIKGASSELVKSDNLIHLQPGQNTVVKNKDNNEEVAKERKNPEDGHKSTKENGPQNTDQNGRPDDAKQTKELKGIRTFKFALAEVVKELLKPAWKEGQITNKEDYKTIVKKVLDKVTSTMQGPNIPQTQEKIDQYLSFSKPKLNKLVQAYVEKVQKPQ 818
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g04293 818 MobiDBLite consensus disorder prediction 340 357 - -
Trre5g04293 818 MobiDBLite consensus disorder prediction 679 731 - -
Trre5g04293 818 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 255 275 IPR000571 GO:0046872
Trre5g04293 818 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 129 151 IPR000571 GO:0046872
Trre5g04293 818 MobiDBLite consensus disorder prediction 281 339 - -
Trre5g04293 818 ProSiteProfiles Zinc finger C3H1-type profile. 127 154 IPR000571 GO:0046872
Trre5g04293 818 MobiDBLite consensus disorder prediction 233 254 - -
Trre5g04293 818 SMART c3hfinal6 128 152 IPR000571 GO:0046872
Trre5g04293 818 SMART c3hfinal6 187 212 IPR000571 GO:0046872
Trre5g04293 818 SMART c3hfinal6 250 276 IPR000571 GO:0046872
Trre5g04293 818 MobiDBLite consensus disorder prediction 107 124 - -
Trre5g04293 818 Pfam RNA-binding, Nab2-type zinc finger 191 210 - -
Trre5g04293 818 MobiDBLite consensus disorder prediction 690 711 - -
Trre5g04293 818 MobiDBLite consensus disorder prediction 41 69 - -
Trre5g04293 818 MobiDBLite consensus disorder prediction 154 184 - -
Trre5g04293 818 MobiDBLite consensus disorder prediction 1 21 - -
Trre5g04293 818 PANTHER PROTEIN FRIGIDA-ESSENTIAL 1 11 816 - -
Trre5g04293 818 MobiDBLite consensus disorder prediction 151 184 - -
Trre5g04293 818 MobiDBLite consensus disorder prediction 281 357 - -
Trre5g04293 818 Gene3D - 122 222 - -
Trre5g04293 818 ProSiteProfiles Zinc finger C3H1-type profile. 250 277 IPR000571 GO:0046872
Trre5g04293 818 ProSiteProfiles Zinc finger C3H1-type profile. 186 213 IPR000571 GO:0046872
Trre5g04293 818 MobiDBLite consensus disorder prediction 81 105 - -
Trre5g04293 818 SUPERFAMILY CCCH zinc finger 252 275 IPR036855 GO:0046872
Trre5g04293 818 Gene3D - 248 318 - -
Trre5g04293 818 MobiDBLite consensus disorder prediction 1 124 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g04293 Trre-Chr5 45002915 45007872 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Trre5g04293 zf-CCCH 0.00031 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g04293 - K22909 gmx:100783856 1043.11
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g04293 5 45002915 45007872 Trre5g04293 5 45002915 45007872 ECH