Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g04289 ATGCTCAATTCCATCCTACACGCTTCCGCAGGTAATCACTCCCGCATAACCGCCACTAAAAGCTGTCTTCAAGTTTTTCAATACTCTCACCACCGTACTTCTCTAACCGTCGAAGCACTCTCACGTGGTAGAATCAAAGATGCACGTGCTTTCATGAGTGCTGCATTGGCTTATCAGTATAATTGTTGGTCTGGTCTCAAATACGCTAACGATACTCAATTGGTTTTCAAAACCATGTCGTTTCTTGATTCTCTCACCAATATTTCCAGTAATGCTCTTAGTATGATTGTCTCGTATGATTTATTCGGTAACGATACTGATTTATGGAGGCCGCCGAGAACCGAACGAGATGGTTTTTGGGAGGATTCTGGGTCGGGTGTGTTTGGGGTGGGGCCGTCTGTACCGGCGAATCTTAAGCCGGATGTTACCGTGTGTAAGGAGACGGGCAGTGGGTGTTATGGGACGGTGCAGGAAGCGGTTGACGCGGCGCCTGATAATGTGGATGTTGGTGGAGGGAGATTTGTGATACATATAAAGGAAGGGGTTTATGAAGAGAGGGTTAGGGTTCCGTTAAGGAAGAGGAATGTTGTGTTTTTGGGTGATGGCATTGGGAAGACTGTCATCACTGGCTCTGCTAGTGTCGGATTACAGGTCGGGATGACAACCTATAACTCTGCCACAGTAGGGGTTGTTGGGGATGGATTCATGGCAAAGGATCTGACAGTCGAAAACACAGCAGGTGCTAATGCACACCAAGCAGTAGCATTCAGATCAGACAGTGATCTTTCTGTTATTGAGAATTGTGAATTCATAGGCAATCAAGATACTCTCTATGCTCAGTCCCTGCGTCAATTTTATAAATCTTGCCGTATTATAGGCAATGTGGATTTCATCTTTGGAAACTCAGCTTCGTTCTTCCAAGACTGCAAAATCCTAGTCCAGCCCAGGCAAGCAAGGCCAAAGAAAGGGGAAAACAATGCCATTACTGCACATGGAAGAACAGATCCTGCCCAGTCTACCGGTTTTGTTTTCCACAACTGCTTGGTTAATGGTACTGAGAAATATATGGAATTGTACTATGAGAACCCTAAAGTACACAAGAACTATCTCGGAAGGCCATGGAAGGAGTATTCTAGAACAGTTTTTATTAATTCGTTCTTGGGAGCCTTAATCACGCCACAGGGTTGGTTGCCATGGAGTGGAGATGTTGGACTGAATACACTCTACTACGGGGAATTCGACAACTCTGGACCTGGTTCTAATTTGACCAAGAGAGTGTCCTGGAGTAGCCAGGTTCCTGCTGAACATGTGTCCACTTATTCCATACAGGGTTTTATTCAAGGAGATGATTGGGTTCATCGTAGCAATTATTAG 1374 0.452 MLNSILHASAGNHSRITATKSCLQVFQYSHHRTSLTVEALSRGRIKDARAFMSAALAYQYNCWSGLKYANDTQLVFKTMSFLDSLTNISSNALSMIVSYDLFGNDTDLWRPPRTERDGFWEDSGSGVFGVGPSVPANLKPDVTVCKETGSGCYGTVQEAVDAAPDNVDVGGGRFVIHIKEGVYEERVRVPLRKRNVVFLGDGIGKTVITGSASVGLQVGMTTYNSATVGVVGDGFMAKDLTVENTAGANAHQAVAFRSDSDLSVIENCEFIGNQDTLYAQSLRQFYKSCRIIGNVDFIFGNSASFFQDCKILVQPRQARPKKGENNAITAHGRTDPAQSTGFVFHNCLVNGTEKYMELYYENPKVHKNYLGRPWKEYSRTVFINSFLGALITPQGWLPWSGDVGLNTLYYGEFDNSGPGSNLTKRVSWSSQVPAEHVSTYSIQGFIQGDDWVHRSNY 457
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g04289 457 Gene3D - 135 457 IPR012334 -
Trre5g04289 457 SUPERFAMILY Pectin lyase-like 139 454 IPR011050 -
Trre5g04289 457 PANTHER PECTINESTERASE 14 453 - -
Trre5g04289 457 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 9 96 IPR035513 -
Trre5g04289 457 Gene3D Invertase/pectin methylesterase inhibitor family protein 1 98 IPR035513 -
Trre5g04289 457 Pfam Pectinesterase 141 449 IPR000070 GO:0030599|GO:0042545
Trre5g04289 457 Pfam Plant invertase/pectin methylesterase inhibitor 11 95 IPR006501 GO:0004857
Trre5g04289 457 FunFam Pectinesterase 135 457 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g04289 Trre-Chr5 44903713 44905466 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g04289 2 455 Carbohydrate Esterase AT5G09760 65.652 0.0 621
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g04289 - - gmx:100802102 721.465