Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g04285 ATGGCTTCAACAACCTCATCCCCTTCATCTCCGAAGCTTGCTAGCTTCATCCGTGGCACTCAGACACCACACGACATTCAGAAGAAGTTGCGGATGAAGAAATATAGGTCGATGGATGATATTATGGCAAGGGCGAGGTATGTGGTGCTTGAAAAGGAGGATTACAGTAGTACCATGTGTGAGCAATGTGGCTCCGGTGACAACCCAGAGGAGCTGCTATTGTGTGATAGATGTGACAATGGGTTTCACATAAAATGTGTGAGACCAATTGTTGTAAGAATTCCAATTGGACCGTGGATTTGCCCCAAATGTTCAGGCACGAAGAAAGCAACAGAGTTCACTGAAAAGGAAATTCTAAAGTTTTTCGGGATTCGAATGGAGGATTTCAGAATGAAAGTTTCTTCTCCCCATGATGCTAGGAGGCGTCGGAGATGTCCAAGACCTATGGTGTTACAAAAGAAAAGCAGGAGACTTTTACAATTTGTTCCTACAGAAGATCATGATAGGAGACTGAAGCAAATGACTTCTCTTGCTTCCGCTTTAACATATTTGAATATGGAGTTTAGTAATCACCTGACATACTTTCCAGGAATGGCTCCTAAATCTCCCAATCAATCATTTTTAGAAAATGGTGACATGCAGACTCTTACTAAGGAAGATAGGAAGACCATAGAATGTTGCACAACAATGATTGAACGAGGCCAATTTCCTCCATTAATGGTCGTCTATGATTCATGCCAAGGTTATACTGTGGAGGCTGATGGTCCAATCAAGGACATGACATTTATTGCAGAATACACAGGAGATGTTGATTATTTAAGTAAAAGAGAATATGATGATTGTGATAGTATCATGACACTACTTCTTGCAGAAGATGGTGCTGCTAGTCTTGTTATTTGTGCTGATAAACGAGCAAACATTGCTCGGTTTATTAGTGGCATCAATAATCATACTATGGAAGGTAAGAAGAAACAAAACTGCAAATGTGTTAGATATAGCGTCGATGGTGAATCTCGGGTCTTTTTGGTTGCTACCCGAGATATTTTTAAAGGAGATAAATTATAG 1065 0.4038 MASTTSSPSSPKLASFIRGTQTPHDIQKKLRMKKYRSMDDIMARARYVVLEKEDYSSTMCEQCGSGDNPEELLLCDRCDNGFHIKCVRPIVVRIPIGPWICPKCSGTKKATEFTEKEILKFFGIRMEDFRMKVSSPHDARRRRRCPRPMVLQKKSRRLLQFVPTEDHDRRLKQMTSLASALTYLNMEFSNHLTYFPGMAPKSPNQSFLENGDMQTLTKEDRKTIECCTTMIERGQFPPLMVVYDSCQGYTVEADGPIKDMTFIAEYTGDVDYLSKREYDDCDSIMTLLLAEDGAASLVICADKRANIARFISGINNHTMEGKKKQNCKCVRYSVDGESRVFLVATRDIFKGDKL 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g04285 354 SMART PHD_3 59 105 IPR001965 -
Trre5g04285 354 Gene3D SET domain 142 354 IPR046341 -
Trre5g04285 354 PANTHER N-LYSINE METHYLTRANSFERASE KMT5A 141 354 - -
Trre5g04285 354 SUPERFAMILY FYVE/PHD zinc finger 50 109 IPR011011 -
Trre5g04285 354 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 7 118 IPR013083 -
Trre5g04285 354 Pfam PHD-finger 59 105 IPR019787 -
Trre5g04285 354 CDD PHD_RSF1 59 104 - -
Trre5g04285 354 ProSitePatterns Zinc finger PHD-type signature. 60 104 IPR019786 -
Trre5g04285 354 ProSiteProfiles SET domain profile. 237 354 IPR001214 GO:0005515
Trre5g04285 354 SUPERFAMILY SET domain 197 354 IPR046341 -
Trre5g04285 354 ProSiteProfiles Zinc finger PHD-type profile. 57 107 IPR019787 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g04285 Trre-Chr5 44879245 44881847 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g04285 31 112 C2H2 Transcription Factor Family AT3G01460 29.670 4.94e-10 59.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Trre5g04285 PHD 1.6e-11 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g04285 K24406 - gmx:100808815 469.544