Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g04273 ATGGTTAGAGAAAAAAATGTTCATGATCTATGCATCACTGTTCCCACCTTCTTCAAATGTCCAATCTCATTAGATGTAATGAAATCCCCTGTTAGTCTCTGCACCGGAATCACCTACGACCGTTCCAGCATCCAACGCTGGTTAGACGATGGTAATAACACGTGTCCCGCTACCATGCAAACACTCCACAGTAAAGATATTGTTCCTAACCGTACTCTACATAGTCTCATCCAGATCTGGACCGACTCGGTTCACCACCGGGTTAACCCACCCGTTTCACCTTCAGTTCCTTCAAAGGAACAAGTCCTTCAAGCCATCACTGACTTACGCGGTTCAAACGGTTTAAACCGGTTCGGTTTAATAACCAAAGTGAACCGTTTCGCTCAAGATTCCGATCAGAACAAAGCTTTTCTCGCGAAATTAGACGGTTTCGTTTCTCTGATGGTTAGTTTACTTGACAATGTCGACGGAAGCGTTGAATTTCTTGAACAAATTTTAACGGCGTTAGGTTTTGTTCTGGAAAAAATCGAAGATCATGAAGGATTGAAAAATCATTTGTTGAAAGGAAATCACAAAAAATGCTTAGATTCTATGGTTCTCGTTTTACAACGAGGAAGTAACAATTCGAGAATCGCAACCGCTAGAGTTTTGAAATTCATCGCTATTGACGCTGAATCAGAGCTTCTAATCGGTGAGAATGAAGCTTTGGTAACCGAATTGTTAAATTTATCATCGCCGGAGAAAGATCCGAAGCTGATTGAGAATTGTTTATCGTGCTTAGTAGCAATTTCAAAGCCGAAACGGAACAAGATGAAGCTAGTGAAAATCGGAGCAATGAATATTTTATCGAAGTTATTAACAGAATCGAATATAAGCGTACCTGTGGTGGAAAAAGCGTTGAAGTTAGTTGAAACAGCGTCGTCGACGAGTGAAGGAAGAAAAGAGATTTGCGAAGATACAGCTTGTGTGGCGGCGATATTGAATAAAGTTTTGAAGGTATCTAATGTTGCGACGGAACACGGCGTAACGACGCTGTGGAGTGTTTGTTATTTGTTTCGCGATCAGAAAGCACAAGAAGCGGTTACGCAAGCGAATGGATTAACGAAGATTTTGTTGCTAATACAGAGTAATTGTTCGCCACATGTTCGACAAATGTGTATGGATTTGCTTAAGATTTTTCGGGTTAATTCTAAATCATGTCTTTCAAGTTATGATACAAAAACTTCTCATATTATGCCATTTTGA 1245 0.4024 MVREKNVHDLCITVPTFFKCPISLDVMKSPVSLCTGITYDRSSIQRWLDDGNNTCPATMQTLHSKDIVPNRTLHSLIQIWTDSVHHRVNPPVSPSVPSKEQVLQAITDLRGSNGLNRFGLITKVNRFAQDSDQNKAFLAKLDGFVSLMVSLLDNVDGSVEFLEQILTALGFVLEKIEDHEGLKNHLLKGNHKKCLDSMVLVLQRGSNNSRIATARVLKFIAIDAESELLIGENEALVTELLNLSSPEKDPKLIENCLSCLVAISKPKRNKMKLVKIGAMNILSKLLTESNISVPVVEKALKLVETASSTSEGRKEICEDTACVAAILNKVLKVSNVATEHGVTTLWSVCYLFRDQKAQEAVTQANGLTKILLLIQSNCSPHVRQMCMDLLKIFRVNSKSCLSSYDTKTSHIMPF 414
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g04273 414 SMART Ubox_2 17 80 IPR003613 GO:0004842|GO:0016567
Trre5g04273 414 ProSiteProfiles U-box domain profile. 13 87 IPR003613 GO:0004842|GO:0016567
Trre5g04273 414 Pfam U-box domain 14 82 IPR003613 GO:0004842|GO:0016567
Trre5g04273 414 Gene3D - 109 403 IPR011989 -
Trre5g04273 414 SUPERFAMILY RING/U-box 5 83 - -
Trre5g04273 414 SUPERFAMILY ARM repeat 122 396 IPR016024 -
Trre5g04273 414 FunFam RING-type E3 ubiquitin transferase 6 86 - -
Trre5g04273 414 CDD RING-Ubox_PUB 15 66 IPR045210 -
Trre5g04273 414 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 13 86 IPR013083 -
Trre5g04273 414 PANTHER WDSAM1 PROTEIN 13 402 IPR045185 GO:0061630
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g04273 Trre-Chr5 44694709 44695953 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g04273 9 414 U-box Gene Family AT5G64660 50.600 1.22e-137 398
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g04273 - - gmx:100799627 539.65
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g04273 5 44694709 44695953 Trre5g04273 5 44694709 44695953 ECH
Trre5g04273 5 44694709 44695953 Trre7g05169 7 58287764 58288751 ECH
Trre7g05169 7 58287764 58288751 Trre5g04273 5 44694709 44695953 PCT