Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g04272 ATGCCCTTTTCTCTTTCTAAGCTCTACGGGATTCCTCCCGAGAAACTCACCTCAGAAGGTCCTGTTCCTATTCTAAGCATGAGTTTGGCGGACACCGAATCCTCAGAGGAAGGTTCGGGGATTCTTGAGCCTCCTGATCCTGATGTTATTGAAATTGATCCTACTAGTCGTTACCTGAGGTATAAGGAAGTAATTGGCAAAGGAGCTTTCAAAACTGTTTATAAGGCATTTGATGAAATCACGGGACTTGAAGTTGCGTGGAGCCAAGTTCGGATCGATGAGGTATTACAATCACCAGGTGACCTAGAAAGGCTGTATTCAGAAGTGCATCTATTGAGGTCATTGAAGCATAGTAACATTGTAAGGTTCTACAATTCATGGATTGATGACAAGCACAGGAATGTTAACATGATTACTGAGTTGTTCACCTCAGGGAGCCTCAGACAGTACCGTAAGAAACACAAGAAGGTCGATATGAAAGCTGTTAAAGGATGGGCAAGACAGATTTTAATGGGCTTAATCTATCTCCACAATCACAACCCACCTATTATACATAGAGATCTCAAGTGTGATAACATATTTATAAATGGTCACCAAGGAGAAGTTAAGATTGGAGATTTGGGTTTGGCAACTCTCTTGAAGCAGAATAATGCCAAGAGTGTAATTGGAACCCCGGAGTTTATGGCGCCGGAACTGTACGATGAAAGTTATAATGAATTAGCTGACATATATTCTTTTGGGATGTGCATGCTGGAGTTGGCTACTTCTGAGTATCCTTACAGAGAATGTAGAAACTCTGCTCAGATATATAAGAAAGTTTCATCTGGCATAAAGCCAGTTTCTCTTTCTAAAATCAAAGATCCAGAAATAAAATCATTTATTGAGAAATGTCTTGTCCCAGCATCTCAAAGATTGTCGGCAAAGGAGCTTCTGATGGACCCTTTTCTTGAAGTGAATGTTTCAATAAAGAATCGTCCTCTTCCATTACCAGATATTGTTCTTCCTAAATACGGAGGCTTTGAAAATCGTTGTCTGATGTCGGAAGGTCCTGCTAGTGCACGTATTGGATCCATTTCAATGGATCTTGGAGATACCAGTGAGCAACCATTGATCACTGTGTTTTATAATTCTAATGATGATGCACCACCTTCTCCATGTGTTGAGATACGAAGGTTGATGGGAGGTGATAGATTTTTTCTCAAAGGTGAAGAAAATGACGTAAATTCTGTATCATTAGTTCTCCGGATAACTAATCAAGGCGGGCGAGCAAGAAATATACATTTCATATTCTACCTCGATACTGATACGGCCATCTCAGTGTCAAGTGAAATGGTTGAGCAACTTGAACTTACCGAGCACAATGTTAAATTCATTGCCGAGTTGATTGATTTGTTATTGACAACTTTGGTTGCTGATTGGAAACCTTGTGTAACGATTGATCACTTAATTTCTCCAAATGGTAAACGAACTCATCTAAACCTACAGAAACAAGACTCGCAAATGGCAAAATTCAAACTAAGTTCAGTGGATTCTAGCGAAATTGTGGCTGAATATTTAGGTCCCTCAACCTCGCATGACAGATCGGCTGAAAAGGAAAACAGTGATAATATGACTTTTTATGATGTTCTATCCCATGCAAACATCGGTTTCCAAAGAACAACGAAGACAGATGATTTGTATTCTGTGACATCTTATGCTTCAGCAACATCTGACTTCAACGATAGGAATTATTCTACAGTTTCATTCGTGTCTGCTAAATCAGGATTCACAGATTTCAGCTTACCTACAGTGAATGGATGGAGTCAATCCTCACTTGCATCAGAAATTGGGGCATCCTCTGATAGAAAGAGCAAGGTTCCATGCATGGAAAGCAACAATTGTCCCCTTAGTACTTCCTCATTTTATGAAACTGAGGATGAGTTGAGAATAGAGTTAGAGAAGATTGAACGGCAATATCAAGATGCAATGAAAGATTTATCGAAAAGAAGATGTGATGCCATCATGGAGACCAGAAAGAGGCTGTCACTAAAAAATACATTCATAGAATAA 2049 0.3953 MPFSLSKLYGIPPEKLTSEGPVPILSMSLADTESSEEGSGILEPPDPDVIEIDPTSRYLRYKEVIGKGAFKTVYKAFDEITGLEVAWSQVRIDEVLQSPGDLERLYSEVHLLRSLKHSNIVRFYNSWIDDKHRNVNMITELFTSGSLRQYRKKHKKVDMKAVKGWARQILMGLIYLHNHNPPIIHRDLKCDNIFINGHQGEVKIGDLGLATLLKQNNAKSVIGTPEFMAPELYDESYNELADIYSFGMCMLELATSEYPYRECRNSAQIYKKVSSGIKPVSLSKIKDPEIKSFIEKCLVPASQRLSAKELLMDPFLEVNVSIKNRPLPLPDIVLPKYGGFENRCLMSEGPASARIGSISMDLGDTSEQPLITVFYNSNDDAPPSPCVEIRRLMGGDRFFLKGEENDVNSVSLVLRITNQGGRARNIHFIFYLDTDTAISVSSEMVEQLELTEHNVKFIAELIDLLLTTLVADWKPCVTIDHLISPNGKRTHLNLQKQDSQMAKFKLSSVDSSEIVAEYLGPSTSHDRSAEKENSDNMTFYDVLSHANIGFQRTTKTDDLYSVTSYASATSDFNDRNYSTVSFVSAKSGFTDFSLPTVNGWSQSSLASEIGASSDRKSKVPCMESNNCPLSTSSFYETEDELRIELEKIERQYQDAMKDLSKRRCDAIMETRKRLSLKNTFIE 682
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g04272 682 FunFam Probable serine/threonine-protein kinase WNK1 44 140 - -
Trre5g04272 682 Gene3D - 408 508 - -
Trre5g04272 682 FunFam probable serine/threonine-protein kinase WNK9 142 321 - -
Trre5g04272 682 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 46 663 - -
Trre5g04272 682 Pfam Protein kinase domain 61 316 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre5g04272 682 Gene3D Transferase(Phosphotransferase) domain 1 142 323 - -
Trre5g04272 682 Pfam Oxidative-stress-responsive kinase 1 C-terminal domain 410 463 IPR024678 GO:0004674|GO:0005524
Trre5g04272 682 Gene3D Phosphorylase Kinase; domain 1 45 140 - -
Trre5g04272 682 SMART serkin_6 59 316 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre5g04272 682 SUPERFAMILY Protein kinase-like (PK-like) 60 362 IPR011009 -
Trre5g04272 682 ProSitePatterns Serine/Threonine protein kinases active-site signature. 183 195 IPR008271 GO:0004672|GO:0006468
Trre5g04272 682 ProSiteProfiles Protein kinase domain profile. 59 316 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre5g04272 682 Coils Coil 638 665 - -
Trre5g04272 682 CDD STKc_WNK 57 316 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g04272 Trre-Chr5 44659996 44663295 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g04272 159 534 MAP Kinase Kinase Kinase AT1G49160 62.663 2.94e-164 477
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK WNK_NRBP Trre5g04272 Pkinase 7.9e-53 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g04272 K08867 - gmx:121175054 960.288