Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g04263 ATGTATGCTTCTACTTCCTATGTTTCACCACTCCTCCATGACCTTCTTGAAAATAATTTCCACTCAAGAAAGTTGCTCCTTCACTCCAATTTAGCCAACCCTCCAATTCCAACAAACATCCATGATTCAACTAAAGATTCATCATATCTTGGAGATGTTGTGATGAGTGGTGATCCCTCTAACACCCCGGTTCGAGCAACAAACACTGGAATTAAGAAGAAAGCTCTCAAGACATTCACAACGGTAAGTTACTCGACCGAGTTGAACTTGCCAAGTTTGGATTCAGAGTGTGTGATATGTTTATCAGAGTTCACTAATGGCGATAAAGTACGCCTTTTGCCAAAGTGTAACCATGGTTTTCATGTTCGTTGCATTGACAAATGGTTAAGTTCACATTCGTCTTGTCCGAAATGTAGACAGTGCCTTATTGAGACTTGTAAGAAAATTGTTGGATCACAAGGTAGTTCATCTCAACCACAACCTATGTTGTTTCCGGTGCCGGAAACAATTGTAACTATAGCACCACTTGAGCCAGAAGGCTTGGTGAGAAACTATAGGGAGGTTAGCTAA 570 0.4088 MYASTSYVSPLLHDLLENNFHSRKLLLHSNLANPPIPTNIHDSTKDSSYLGDVVMSGDPSNTPVRATNTGIKKKALKTFTTVSYSTELNLPSLDSECVICLSEFTNGDKVRLLPKCNHGFHVRCIDKWLSSHSSCPKCRQCLIETCKKIVGSQGSSSQPQPMLFPVPETIVTIAPLEPEGLVRNYREVS 189
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g04263 189 SUPERFAMILY RING/U-box 76 144 - -
Trre5g04263 189 CDD RING-H2_EL5-like 96 139 - -
Trre5g04263 189 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 59 143 IPR013083 -
Trre5g04263 189 FunFam RING-H2 finger protein ATL73 58 144 - -
Trre5g04263 189 PANTHER RING-H2 FINGER PROTEIN ATL78 62 181 IPR044602 GO:0016567|GO:0016740
Trre5g04263 189 ProSiteProfiles Zinc finger RING-type profile. 97 139 IPR001841 -
Trre5g04263 189 Pfam Ring finger domain 96 139 IPR001841 -
Trre5g04263 189 SMART ring_2 97 138 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g04263 Trre-Chr5 44599943 44600623 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g04263 51 143 C3H Transcription Factor Family AT1G20823 48.958 2.63e-28 103
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g04263 K19040 - gmx:100787934 231.491
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g04263 5 44599943 44600623 Trre5g04263 5 44599943 44600623 ECH
Trre9g01438 9 12256251 12256883 Trre5g04263 5 44599943 44600623 ECH
Trre7g05155 7 58179819 58180499 Trre5g04263 5 44599943 44600623 PCT