Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g04248 ATGACTTTGTTATCTAAGGCTGTGTTTAACGGAGGAATGAAAACTTCTGTGTTTGTTTTTTATAGACAACTTATTGGAGCCATTGTTATGGTCCCTCTAGCTTTGATATTTGAAAGGAAACAAGCTGTGCCAGTGACATTCTCATTTATGACAATATTCAAGATTTTTATGCTTTCATTATTGGGAATTACTTTAACTCTGAATGTGCATGGCATTGCCCTTTCTTATACGTCTGCTATGCTGGCTGCTGCAATTGTTAATTGCCTCCCTGCTTCAACATTCTTCTTTGCTGTTCTCCTCAGAGTGGAGAAGGTAAATTTAAGGACAAAATCTGGAATTTCAAAGATAGGGAGTGTATTATTGTGCATGGCTGGTGTAGCAATCCTTGCATTTTACAAAGGACCCCAGTTACAGGTTTATCATCTCCTATCTAGATATCATCACAACAATCAACAACATGAAGATCATTTTTCATATAACAAAAAATGGATTTTGGGTTCTTTACTATTGTTCCTAGCTACCATCATGTGGAGTTTGTGGCTTGTACTTCAGGCTCAATTACTTAAAAGTTACCCTTCAAAGCTAACATTCATGAGCATTCAGAGCTTATCAAGTGCAATTCAGTCATTTTTCATTGCCATAGCTTTTGAAAGAGATATTGAGCAGTGGAAGTTGGGATGGAATATGAGACTGCTAGCAGTTGTTTACTGTGGGACACTAGTGACTGCAGTTGCATACTACCTGCAAGCATTAGTGATTGATAAGAAAGGACCAGTTTTCCCAGCAACCTGGAATCCACTAAGCTTTATAATTGCTACCATTGGTTCTGTTTTGCTCTTGGGAGAGCCATTATGTTTAGGAAGTGTTTTGGGTGGGATTCTGCTGGTTTTAAGTCTTTACACTGTTTTGTGGGCAAAAAGCAAAGAAGGAGTCACTAATCAAAATTCTTTACCTATTCAAGCATATAAAGAATGTGCAGGTCAGGTGAAAACAGATGTAGCATGTAGCAAATCACCACAATGA 1023 0.3783 MTLLSKAVFNGGMKTSVFVFYRQLIGAIVMVPLALIFERKQAVPVTFSFMTIFKIFMLSLLGITLTLNVHGIALSYTSAMLAAAIVNCLPASTFFFAVLLRVEKVNLRTKSGISKIGSVLLCMAGVAILAFYKGPQLQVYHLLSRYHHNNQQHEDHFSYNKKWILGSLLLFLATIMWSLWLVLQAQLLKSYPSKLTFMSIQSLSSAIQSFFIAIAFERDIEQWKLGWNMRLLAVVYCGTLVTAVAYYLQALVIDKKGPVFPATWNPLSFIIATIGSVLLLGEPLCLGSVLGGILLVLSLYTVLWAKSKEGVTNQNSLPIQAYKECAGQVKTDVACSKSPQ 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g04248 340 PANTHER WAT1-RELATED PROTEIN 1 310 IPR030184 GO:0016020|GO:0022857
Trre5g04248 340 SUPERFAMILY Multidrug resistance efflux transporter EmrE 21 133 - -
Trre5g04248 340 SUPERFAMILY Multidrug resistance efflux transporter EmrE 232 307 - -
Trre5g04248 340 Pfam EamA-like transporter family 165 303 IPR000620 GO:0016020
Trre5g04248 340 Pfam EamA-like transporter family 13 114 IPR000620 GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g04248 Trre-Chr5 44431805 44437859 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g04248 1 237 Nodulin-like Gene Family AT5G64700 53.909 3.40e-76 233
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g04248 - - vun:114162763 426.787